Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_000991 and ABIE53_000992 are separated by 34 nucleotidesABIE53_000992 and ABIE53_000993 are separated by 1 nucleotidesABIE53_000993 and ABIE53_000994 are separated by 102 nucleotidesABIE53_000994 and ABIE53_000995 are separated by 23 nucleotides ABIE53_000991: ABIE53_000991 - putative MFS transporter, at 1,086,900 to 1,088,312 _000991 ABIE53_000992: ABIE53_000992 - hypothetical protein, at 1,088,347 to 1,088,901 _000992 ABIE53_000993: ABIE53_000993 - AAHS family cis,cis-muconate transporter-like MFS transporter, at 1,088,903 to 1,090,264 _000993 ABIE53_000994: ABIE53_000994 - DNA polymerase III alpha subunit, at 1,090,367 to 1,090,705 _000994 ABIE53_000995: ABIE53_000995 - hypothetical protein, at 1,090,729 to 1,091,301 _000995
Group Condition ABIE53_000991 ABIE53_000992 ABIE53_000993 ABIE53_000994 ABIE53_000995
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.7 -0.5 N.D. -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.6 -0.4 N.D. -0.7
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.5 -0.1 N.D. -1.4
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.3 -0.1 +0.1 N.D. -1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.7 -0.2 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -1.0 -0.2 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.2 -0.3 N.D. -0.7
carbon source Shikimic Acid 5 mM (C) -0.2 -0.6 -0.3 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.1 -0.4 N.D. +0.3
r2a outgrowth control R2A outgrowth control -0.2 +0.3 -0.2 N.D. -0.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 +0.4 -0.0 N.D. -1.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.1 +0.2 N.D. -1.4
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.1 +0.4 +0.0 N.D. -1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.4 -0.3 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.6 -0.3 N.D. +0.3
carbon source L-Alanine (C) -0.1 +0.4 -0.2 N.D. -0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +0.8 +0.1 N.D. -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.6 -0.4 N.D. +0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.2 -0.2 N.D. +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.0 -0.3 N.D. +0.6
carbon source Ethanol (C) -0.1 -0.5 -0.1 N.D. +0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 +1.0 +0.2 N.D. -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.6 +0.2 N.D. +0.7
mixed community Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia +0.1 -0.4 -0.0 N.D. +0.8
soil extract Lumichrome 5 mM in soil extract -0.0 -0.3 -0.1 N.D. +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.8 +0.0 N.D. -0.4
soil extract Indole-3-pyruvic 5 mM in soil extract +0.3 -0.2 -0.0 N.D. +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.2 -0.0 N.D. +1.1
carbon source D-Lactate (C) +0.2 +0.6 +0.1 N.D. +0.4
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 +0.9 -0.2 N.D. +0.6
remove
ABIE53_000991
plot		 remove
ABIE53_000992
plot		 remove
ABIE53_000993		 remove
ABIE53_000994
plot		 remove
ABIE53_000995
plot