Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000894 and ABIE53_000895 are separated by 59 nucleotidesABIE53_000895 and ABIE53_000896 are separated by 97 nucleotidesABIE53_000896 and ABIE53_000897 are separated by 141 nucleotidesABIE53_000897 and ABIE53_000898 are separated by 340 nucleotides ABIE53_000894: ABIE53_000894 - type IV pilus assembly protein PilE, at 969,906 to 970,337 _000894 ABIE53_000895: ABIE53_000895 - hypothetical protein, at 970,397 to 970,861 _000895 ABIE53_000896: ABIE53_000896 - putative membrane protein YqjE, at 970,959 to 971,345 _000896 ABIE53_000897: ABIE53_000897 - ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein, at 971,487 to 971,789 _000897 ABIE53_000898: ABIE53_000898 - alkyl hydroperoxide reductase subunit AhpC, at 972,130 to 972,768 _000898
Group Condition ABIE53_000894 ABIE53_000895 ABIE53_000896 ABIE53_000897 ABIE53_000898
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -2.6 -1.1 -0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -1.2 -1.0 -0.3 -0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -1.1 -0.8 -0.4 +0.3
stress RCH2_defined_glucose_5mM with Ferulic Acid 5 mM +0.2 -0.9 -0.7 -1.0 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.7 +0.1 -0.6 -0.9
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -0.1 -1.1 -1.4 +0.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.0 -1.0 -1.0 +0.4
stress R2A with PEG 6000 16 vol% -0.2 -0.8 -0.8 -0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.4 -0.8 -0.6 +0.1
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.0 -0.9 -1.0 +0.3 +0.1
stress RCH2_defined_glucose_5mM with D,L-Malic Acid 5 mM +0.2 -0.8 -0.4 -0.7 +0.2
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.5 -0.3 -0.4 -0.9 -0.2
nitrogen source histamine 2mM N source -0.3 -0.7 +0.1 -0.8 +0.5
stress RCH2_defined_glucose_5mM with Chlorogenic 1 mM +0.6 -0.4 -0.5 -0.7 +0.3
carbon source Acetylated xylan 10 g/L (C) -1.1 -0.8 +0.2 +0.6 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -1.0 +0.8 -0.3 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 +0.1 +0.8 +0.7 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -0.4 +0.9 +0.3 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.5 +0.7 -0.5 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.8 +0.5 -0.1 +0.4
carbon source Tween 20 (C) +0.4 +0.7 +0.0 +0.5 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.0 +0.8 +0.9 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.8 +0.6 -0.5 -0.2
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +0.5 +0.6 -0.1 +0.7 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +1.0 -0.6 +1.1 +0.0
stress M9 with Ethanol 2.5 vol% -0.1 +0.8 +0.5 +1.0 -0.3
stress R2A with 3-methyl-3-butenol 4.5 g/L -0.3 +0.9 +0.5 +0.9 -0.2
phage Burk1_100 +0.3 +0.8 +0.3 +0.8 -0.3
stress M9 with Ethanol 2.5 vol% -0.0 +0.4 +0.6 +1.1 +0.1
stress R2A with 3-methyl-3-butenol 4.5 g/L +0.3 +1.0 +1.0 +0.9 -0.1
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