Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000857 and ABIE53_000858 are separated by 318 nucleotidesABIE53_000858 and ABIE53_000859 are separated by 193 nucleotidesABIE53_000859 and ABIE53_000860 are separated by 9 nucleotidesABIE53_000860 and ABIE53_000861 overlap by 29 nucleotides ABIE53_000857: ABIE53_000857 - NAD+ kinase, at 934,396 to 935,298 _000857 ABIE53_000858: ABIE53_000858 - heat-inducible transcriptional repressor, at 935,617 to 936,636 _000858 ABIE53_000859: ABIE53_000859 - ferrochelatase, at 936,830 to 937,900 _000859 ABIE53_000860: ABIE53_000860 - ribosome-associated heat shock protein Hsp15, at 937,910 to 938,317 _000860 ABIE53_000861: ABIE53_000861 - hypothetical protein, at 938,289 to 938,450 _000861
Group Condition ABIE53_000857 ABIE53_000858 ABIE53_000859 ABIE53_000860 ABIE53_000861
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.6 N.D. -2.8 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.9 N.D. -0.9 -0.5
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM N.D. -3.9 N.D. -1.2 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.2 N.D. -2.3 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.7 N.D. -0.3 -0.4
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. -2.9 N.D. -0.9 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.5 N.D. -1.5 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.6 N.D. -1.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -3.0 N.D. -1.2 +0.2
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. -2.2 N.D. -1.4 -0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. -3.3 N.D. -0.5 +0.1
stress RCH2_defined_glucose_5mM with Chlorogenic 2 mM N.D. -3.0 N.D. -0.7 +0.1
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. -3.7 N.D. +0.1 -0.2
stress M9 with 3-methyl-2-butenol 2 g/L N.D. -3.4 N.D. -0.4 +0.2
stress M9 with 3-methyl-2-butenol 2 g/L N.D. -3.3 N.D. -0.4 +0.0
stress M9 with 3-methyl-2-butenol 2 g/L N.D. -3.3 N.D. -0.3 +0.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. -3.0 N.D. -0.6 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -1.8 N.D. -1.4 +0.4
stress M9 with 3-methyl-2-butenol 2 g/L N.D. -3.3 N.D. +0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.1 N.D. +0.2 +0.3
stress M9 with Propan-1-ol 13 g/L N.D. -3.1 N.D. +0.5 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.2 N.D. +1.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.5 N.D. +1.1 -0.7
stress M9 with Ethanol 2.5 vol% N.D. -2.7 N.D. +0.8 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -2.8 N.D. +1.2 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.9 N.D. +1.5 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.3 N.D. +3.5 +0.2
soil extract control soil extract with no extra compounds N.D. +6.5 N.D. -0.4 -0.1
soil extract Sucrose 5 mM in soil extract N.D. +8.1 N.D. +0.0 -0.1
soil extract Sucrose 5 mM in soil extract N.D. +8.3 N.D. -0.0 -0.2
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