Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000843 and ABIE53_000844 are separated by 137 nucleotidesABIE53_000844 and ABIE53_000845 are separated by 193 nucleotidesABIE53_000845 and ABIE53_000846 are separated by 690 nucleotidesABIE53_000846 and ABIE53_000847 are separated by 116 nucleotides ABIE53_000843: ABIE53_000843 - glycolate oxidase FAD binding subunit, at 913,392 to 914,480 _000843 ABIE53_000844: ABIE53_000844 - glycolate oxidase, at 914,618 to 916,111 _000844 ABIE53_000845: ABIE53_000845 - D-lactate dehydrogenase (cytochrome), at 916,305 to 917,720 _000845 ABIE53_000846: ABIE53_000846 - cob(I)alamin adenosyltransferase, at 918,411 to 918,965 _000846 ABIE53_000847: ABIE53_000847 - nitric oxide dioxygenase, at 919,082 to 920,287 _000847
Group Condition ABIE53_000843 ABIE53_000844 ABIE53_000845 ABIE53_000846 ABIE53_000847
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.3 -1.1 -1.3 -3.4 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.2 -1.1 -0.3 -1.7 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 -1.1 -0.4 -2.3 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.9 -0.7 +0.3 -2.4 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.1 -0.9 -0.2 -2.8 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.9 -0.2 -0.3 -0.6 +0.1
carbon source butyrate (C) -2.1 -0.7 -0.4 -1.3 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 -0.7 -0.1 -3.6 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 -0.3 -1.3 -1.5 -0.1
nitrogen source Xanthine 5 mM (N) -2.2 -1.6 -0.8 +0.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 -0.7 +0.5 -0.1 -0.4
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM -3.2 -0.5 -0.2 +0.0 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -2.9 -2.0 +0.1 +0.4 +0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 -0.3 -0.2 -3.0 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.1 +0.3 -2.4 +0.1
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -2.7 -2.0 +0.1 +0.7 +0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 -0.6 -0.6 -3.0 +0.2
nitrogen source 1-aminocyclopropane-1-carboxylate (ACC) (N) -2.1 -1.7 -0.3 +0.6 +0.5
nitrogen source 1-aminocyclopropane-1-carboxylate (ACC) (N) -1.8 -1.6 -0.1 +0.3 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 -0.9 +0.5 -2.7 +0.2
carbon source D,L-Lactate (C) -2.5 -1.5 +0.2 +0.8 +0.5
nitrogen source Ammonium chloride 30 mM (N) -1.4 -1.9 -0.3 +0.9 +0.4
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -1.6 -1.7 +0.3 +0.9 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.4 +0.4 -2.6 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 +1.7 +1.0 -4.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 +0.1 +0.4 -1.9 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 +1.5 +0.7 -2.6 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +1.0 +0.9 -1.1 -0.3
carbon source D-Lactate (C) -3.0 -2.6 +3.3 +7.4 +2.3
carbon source D-Lactate (C) -2.0 -2.8 +3.8 +7.2 +2.8
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