Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000815 and ABIE53_000816 are separated by 164 nucleotidesABIE53_000816 and ABIE53_000817 are separated by 228 nucleotidesABIE53_000817 and ABIE53_000818 are separated by 892 nucleotidesABIE53_000818 and ABIE53_000819 are separated by 472 nucleotides ABIE53_000815: ABIE53_000815 - putative DNA-binding transcriptional regulator YafY, at 884,762 to 885,508 _000815 ABIE53_000816: ABIE53_000816 - putative enzyme related to lactoylglutathione lyase, at 885,673 to 886,056 _000816 ABIE53_000817: ABIE53_000817 - putative N6-adenine-specific DNA methylase, at 886,285 to 887,583 _000817 ABIE53_000818: ABIE53_000818 - uncharacterized membrane protein YhaH (DUF805 family), at 888,476 to 888,814 _000818 ABIE53_000819: ABIE53_000819 - putative lipoprotein YmbA, at 889,287 to 890,018 _000819
Group Condition ABIE53_000815 ABIE53_000816 ABIE53_000817 ABIE53_000818 ABIE53_000819
plant outgrowth control Plant outgrowth control -0.7 -0.1 -0.0 -0.8 -0.4
stress R2A with Tricalcium phosphate 0.5 g/L -0.2 +0.1 -0.3 -1.3 -0.2
stress R2A with Chloride 200 mM -0.9 -0.1 +0.2 -0.6 -0.0
plant outgrowth control Plant outgrowth control -0.5 +0.0 +0.5 -0.6 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.5 +0.1 -1.3 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 -0.8 -0.4 -0.3 -0.1
carbon source Shikimic Acid 5 mM (C) -0.1 +0.5 +0.1 -1.3 -0.2
stress R2A with Tricalcium phosphate 0.5 g/L -0.1 +0.5 -0.3 -1.0 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 -1.1 -0.2 -0.3 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.7 +0.3 -0.7 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.2 -0.6 -0.0 -0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.4 +1.0 -0.2 +0.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.1 +0.2 -0.5 -0.8
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 -0.1 -0.2 -1.0
stress RCH2_defined_glucose_5mM with caffeic 1 mM -1.0 -0.2 +0.1 +0.5 +0.1
carbon source Acetylated xylan 10 g/L (C) -0.1 +0.7 +0.2 -0.7 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.6 -0.2 +0.4 -0.1
carbon source L-Phenylalanine (C) -0.9 +0.1 +0.5 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 -0.6 -0.4 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.3 +0.3 +0.5 -0.9
plant outgrowth control Plant outgrowth control +0.8 -0.1 +0.6 -0.7 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.6 -0.4 -0.4 +0.1
stress M9 with 3-methyl-2-butenol 2 g/L -0.5 -0.1 +0.1 +1.0 +0.2
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.6 -0.5 +0.3 +0.7 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 +1.1 -0.0 -0.4 +0.2
r2a outgrowth control R2A outgrowth control +0.6 +0.6 +0.1 -0.2 +0.3
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.7 -0.3 +0.5 +0.3 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -0.3 +0.1 +0.9 -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.6 -0.4 +0.8 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.7 +0.2 +0.3 -0.1
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