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Homologs
Fitness for 5 genes in
Paraburkholderia graminis OAS925
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500 nt
ABIE53_000805 and ABIE53_000806 are separated by 40 nucleotides
ABIE53_000806 and ABIE53_000807 are separated by 10 nucleotides
ABIE53_000807 and ABIE53_000808 are separated by 15 nucleotides
ABIE53_000808 and ABIE53_000809 are separated by 128 nucleotides
ABIE53_000805: ABIE53_000805 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 873,330 to 874,088
_000805
ABIE53_000806: ABIE53_000806 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase, at 874,129 to 874,683
_000806
ABIE53_000807: ABIE53_000807 - glycyl-tRNA synthetase beta chain, at 874,694 to 876,796
_000807
ABIE53_000808: ABIE53_000808 - glycyl-tRNA synthetase alpha chain, at 876,812 to 877,837
_000808
ABIE53_000809: ABIE53_000809 - glutamate synthase domain-containing protein 2, at 877,966 to 879,576
_000809
Group
Condition
ABIE53
_000805
ABIE53
_000806
ABIE53
_000807
ABIE53
_000808
ABIE53
_000809
plant outgrowth control
Plant outgrowth control
-3.9
N.D.
N.D.
N.D.
-0.4
stress
Growth in presence of pinene
-4.2
N.D.
N.D.
N.D.
-0.1
stress
RCH2_defined_glucose_5mM with Pyridoxal 1 mM
-4.0
N.D.
N.D.
N.D.
-0.2
r2a outgrowth control
R2A outgrowth control
-4.3
N.D.
N.D.
N.D.
+0.1
carbon source
Cinnamic and Ethanols
-4.3
N.D.
N.D.
N.D.
+0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-3.9
N.D.
N.D.
N.D.
-0.1
plant outgrowth control
Plant outgrowth control
-3.7
N.D.
N.D.
N.D.
-0.2
stress
RCH2_defined_glucose_5mM with Cinnamic 5 mM
-4.0
N.D.
N.D.
N.D.
+0.1
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-4.1
N.D.
N.D.
N.D.
+0.3
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-3.6
N.D.
N.D.
N.D.
-0.3
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-4.1
N.D.
N.D.
N.D.
+0.2
stress
RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM
-3.9
N.D.
N.D.
N.D.
+0.1
r2a outgrowth control
R2A outgrowth control
-3.6
N.D.
N.D.
N.D.
-0.2
stress
RCH2_defined_glucose_5mM with Pyridoxal 0.5 mM
-3.9
N.D.
N.D.
N.D.
+0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
-3.5
N.D.
N.D.
N.D.
-0.2
carbon source
Ethanol (C)
-3.9
N.D.
N.D.
N.D.
+0.1
stress
RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM
-3.7
N.D.
N.D.
N.D.
+0.0
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-3.3
N.D.
N.D.
N.D.
-0.3
carbon source
2,3-dihydroxybenzoic and Ethanols
-3.5
N.D.
N.D.
N.D.
-0.0
stress
RCH2_defined_glucose_5mM with Cinnamic 5 mM
-3.8
N.D.
N.D.
N.D.
+0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-3.6
N.D.
N.D.
N.D.
+0.2
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-3.5
N.D.
N.D.
N.D.
+0.0
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-3.6
N.D.
N.D.
N.D.
+0.2
stress
RCH2_defined_glucose_5mM with Pyridoxal 1 mM
-3.5
N.D.
N.D.
N.D.
+0.1
plant outgrowth control
Plant outgrowth control
-3.7
N.D.
N.D.
N.D.
+0.3
carbon source
2,3-dihydroxybenzoic and Ethanols
-3.5
N.D.
N.D.
N.D.
+0.1
carbon source
Ferulic Acid and Ethanols
-3.5
N.D.
N.D.
N.D.
+0.2
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-3.4
N.D.
N.D.
N.D.
+0.5
stress
M9 with 3-methyl-2-butenol 2 g/L
+3.3
N.D.
N.D.
N.D.
+0.3
stress
M9 with 3-methyl-2-butenol 2 g/L
+3.7
N.D.
N.D.
N.D.
+0.0
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