Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000736 and ABIE53_000737 are separated by 152 nucleotidesABIE53_000737 and ABIE53_000738 overlap by 4 nucleotidesABIE53_000738 and ABIE53_000739 overlap by 14 nucleotidesABIE53_000739 and ABIE53_000740 are separated by 2 nucleotides ABIE53_000736: ABIE53_000736 - methyl-accepting chemotaxis protein-1 (serine sensor receptor), at 793,708 to 795,366 _000736 ABIE53_000737: ABIE53_000737 - cytochrome c553, at 795,519 to 796,328 _000737 ABIE53_000738: ABIE53_000738 - cytochrome c oxidase subunit 1, at 796,325 to 797,950 _000738 ABIE53_000739: ABIE53_000739 - cytochrome c oxidase subunit 2, at 797,937 to 798,515 _000739 ABIE53_000740: ABIE53_000740 - hypothetical protein, at 798,518 to 798,694 _000740
Group Condition ABIE53_000736 ABIE53_000737 ABIE53_000738 ABIE53_000739 ABIE53_000740
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -1.0 +0.3 -0.1 -0.9
carbon source L-Proline (C) -1.3 -0.0 -0.1 -0.9 -0.1
carbon source D-Glucuronic Acid (C) -0.5 -0.4 -0.0 -0.6 -0.4
carbon source L-Proline (C) -1.1 -0.3 -0.0 -0.3 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.4 +0.1 -0.5 -0.7
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.1 -0.5 +0.0 -1.0 -0.1
carbon source D-Fructose (C) -0.6 -0.1 +0.1 -0.5 -0.4
carbon source D-Mannose (C) -0.6 +0.3 +0.2 -0.8 -0.2
carbon source m-Inositol (C) -0.8 +0.2 +0.1 -0.6 +0.1
carbon source L-Lactate (C) -0.6 +0.2 -0.1 -0.6 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 +0.9 +0.4 -0.3 +0.6
carbon source D-Galacturonic Acid (C) -0.7 +0.3 +0.4 -0.5 +0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 +0.2 +0.2 +0.4 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.5 -0.2 +0.6 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +0.5 +0.2 +0.1 +0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.6 -0.3 +0.2 -0.1 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.6 -0.2 +0.6 +0.0
carbon source D,L-Malic Acid (C) -0.4 +0.4 +0.4 -0.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.6 +0.3 +0.3 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.5 +0.2 -0.3 +0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.4 +0.4 +0.2 +0.1 +0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 +0.0 +0.1 +0.5 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.6 +0.3 -0.4 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.5 +0.0 +1.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 -0.5 +0.2 +0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 +0.6 +0.1 +0.5 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.2 +0.4 +1.2 -0.3
soil extract Indole-3-pyruvic 5 mM in soil extract +0.1 +0.7 +0.5 +0.8 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.2 +0.2 +0.9 +1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.2 +0.4 +0.7 +0.7
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ABIE53_000736
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ABIE53_000737
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ABIE53_000739
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ABIE53_000740
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