Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000726 and ABIE53_000727 are separated by 68 nucleotidesABIE53_000727 and ABIE53_000728 are separated by 95 nucleotidesABIE53_000728 and ABIE53_000729 are separated by 180 nucleotidesABIE53_000729 and ABIE53_000730 are separated by 326 nucleotides ABIE53_000726: ABIE53_000726 - threonine/homoserine/homoserine lactone efflux protein, at 779,843 to 780,469 _000726 ABIE53_000727: ABIE53_000727 - 8-oxo-dGTP pyrophosphatase MutT (NUDIX family), at 780,538 to 781,389 _000727 ABIE53_000728: ABIE53_000728 - formyltetrahydrofolate deformylase, at 781,485 to 782,354 _000728 ABIE53_000729: ABIE53_000729 - putative iron-regulated membrane protein, at 782,535 to 783,818 _000729 ABIE53_000730: ABIE53_000730 - iron complex outermembrane receptor protein, at 784,145 to 786,331 _000730
Group Condition ABIE53_000726 ABIE53_000727 ABIE53_000728 ABIE53_000729 ABIE53_000730
phage Burk1_10 -1.1 -0.4 -3.3 -0.0 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 -0.3 -2.6 +0.6 +0.1
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.4 -0.2 -3.1 +0.0 +0.4
phage Burk2_1 -0.7 -0.4 -3.1 -0.0 +0.0
phage Burk2_10 -0.3 -0.4 -3.4 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 -0.7 -3.0 +0.2 +0.2
phage Burk1_100 -0.1 -0.6 -3.6 +0.4 +0.2
NLDM -0.1 -0.4 -3.3 +0.1 +0.1
phage Burk2_10 +0.0 -0.3 -3.4 +0.2 +0.1
NLDM +0.4 -0.6 -3.3 +0.0 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.2 -2.6 +0.2 +0.1
phage Burk1_100 +0.3 -0.5 -3.4 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.6 -0.1 -1.8 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 -2.5 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.6 -2.5 +0.1 +0.2
phage Burk2_1 +0.1 -0.5 -2.7 +0.0 +0.0
phage Burk1_10 +0.1 -0.2 -3.2 +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 -0.2 -2.3 +0.2 +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -3.4 -0.1 +0.4 -0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.4 -1.6 +0.3 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -0.7 -2.6 +0.2 +0.2
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -2.6 +0.1 -0.5 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.5 -0.1 -0.4 +0.3 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.3 -2.2 +0.5 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.0 -3.1 +0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -0.7 -2.4 +0.2 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.5 -2.3 +0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +2.1 -0.8 -3.5 -0.0 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -0.4 -2.2 +0.0 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 -0.4 -2.0 +0.0 +0.3
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