Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000723 and ABIE53_000724 are separated by 122 nucleotidesABIE53_000724 and ABIE53_000725 are separated by 78 nucleotidesABIE53_000725 and ABIE53_000726 are separated by 61 nucleotidesABIE53_000726 and ABIE53_000727 are separated by 68 nucleotides ABIE53_000723: ABIE53_000723 - arabinose-5-phosphate isomerase, at 775,976 to 776,959 _000723 ABIE53_000724: ABIE53_000724 - CPA2 family monovalent cation:H+ antiporter-2, at 777,082 to 779,136 _000724 ABIE53_000725: ABIE53_000725 - adenine phosphoribosyltransferase, at 779,215 to 779,781 _000725 ABIE53_000726: ABIE53_000726 - threonine/homoserine/homoserine lactone efflux protein, at 779,843 to 780,469 _000726 ABIE53_000727: ABIE53_000727 - 8-oxo-dGTP pyrophosphatase MutT (NUDIX family), at 780,538 to 781,389 _000727
Group Condition ABIE53_000723 ABIE53_000724 ABIE53_000725 ABIE53_000726 ABIE53_000727
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 -0.0 -0.1 -3.4 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -0.2 -0.2 -1.9 -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 -0.2 +0.2 -2.5 -0.1
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.1 -0.1 +0.0 -2.6 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 +0.1 +0.4 -1.5 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.1 -0.1 -0.2 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.2 +0.4 -2.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.1 +0.8 -0.0 -1.6 -0.1
carbon source D-Gluconic Acid (C) -0.6 +0.4 +0.1 -1.5 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.0 +0.4 -0.7 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.6 -0.1 -1.0 -0.1
carbon source L-Proline (C) -0.7 +0.7 +0.1 -1.5 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.3 +0.3 -1.0 -0.4
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -0.1 +0.7 -1.4 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.6 +0.7 -0.2 -0.3 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.5 +0.2 -0.6 +0.1
stress M9 with 3-methyl-2-butenol 2 g/L -0.2 +0.6 +0.4 -0.9 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.3 +0.1 +0.6 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.9 +0.2 -0.5 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.4 +0.0 +1.0 -0.3
carbon source Acetylated xylan 10 g/L (C) -0.5 +0.5 -0.2 +1.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.9 -0.0 +0.1 +2.1 -0.8
carbon source Adenosine (C) -0.9 +0.2 +0.3 +1.2 +0.0
carbon source D-Sorbitol (C) -0.8 +0.7 +0.1 +0.8 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +1.9 -0.1 +0.3 -0.5
carbon source D,L-Malic Acid (C) -0.4 +0.5 -0.3 +1.6 +0.0
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.5 +0.5 +1.4 +0.6 +0.2
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.5 +0.5 +1.9 +1.1 +0.1
soil extract Adenine 5 mM in soil extract -0.4 +0.8 +3.8 -0.2 -0.0
soil extract Adenine 5 mM in soil extract -0.5 +0.7 +3.9 +0.0 -0.0
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ABIE53_000724
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ABIE53_000727
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