Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_000694	ABIE53_000695	ABIE53_000696	ABIE53_000697	ABIE53_000698
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	N.D.	-0.4	-0.4	-1.9	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-1.9	-0.3	-0.4	+0.2
soil extract	Indole-3-pyruvic 5 mM in soil extract	N.D.	-1.6	-0.5	-0.3	+0.1
stress	RCH2_defined_glucose_5mM with Cinnamic 5 mM	N.D.	-1.6	-0.3	-0.2	+0.1
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	N.D.	-2.3	-0.1	+0.4	+0.1
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	N.D.	+0.5	-0.3	-2.1	+0.0
carbon source	Adenosine (C)	N.D.	-1.2	-0.2	-0.4	-0.1
carbon source	Acetylated xylan 10 g/L (C)	N.D.	-0.2	-0.1	-1.5	+0.1
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	N.D.	+0.1	+0.3	-2.0	+0.1
soil extract	Indole-3-pyruvic 5 mM in soil extract	N.D.	-1.3	-0.1	-0.5	+0.3
stress	RCH2_defined_glucose_5mM with Cinnamic 5 mM	N.D.	-1.1	-0.4	-0.3	+0.2
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	N.D.	+0.3	+0.0	-1.7	-0.2
soil extract	Adenine 5 mM in soil extract	N.D.	-0.6	-0.2	-0.8	+0.0
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM	N.D.	-0.2	-0.6	-0.7	+0.1
carbon source	Acetylated xylan 10 g/L (C)	N.D.	+0.4	+0.1	-1.7	+0.1
plant outgrowth control	Plant outgrowth control	N.D.	-1.0	-0.2	+0.3	-0.1
stress	RCH2_defined_glucose_5mM with Ferulic Acid 5 mM	N.D.	+0.5	-0.4	-0.4	+0.1
stress	RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM	N.D.	+0.7	-0.6	-0.2	+0.1
stress	RCH2_defined_glucose_5mM with Serotonin 5 mM	N.D.	+0.6	-0.6	-0.2	+0.1
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM	N.D.	+0.8	-0.4	-0.4	+0.2
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	N.D.	+0.6	-0.3	-0.5	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.3	-0.7	+0.3	+0.4
stress	RCH2_defined_glucose_5mM with Serotonin 5 mM	N.D.	+0.8	-0.7	+0.1	+0.2
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	N.D.	+1.3	-0.5	-0.4	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+1.0	+0.3	-0.2	-0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.2	+1.2	-0.2	+0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.3	+1.1	+0.1	+0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.9	+0.6	+0.2	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	+1.4	+0.3	+0.2	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+1.0	+1.0	+0.1	-0.0