Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_000645	ABIE53_000646	ABIE53_000647	ABIE53_000648	ABIE53_000649
carbon source	L-Malic (C)	-0.2	-3.4	-3.4	-3.9	-2.1
carbon source	succinate (C)	+0.0	-3.3	-2.9	-3.4	-2.2
carbon source	Fumarate (C)	+0.3	-2.9	-2.6	-5.5	-0.7
carbon source	succinate (C)	+0.2	-2.9	-2.7	-3.2	-1.6
carbon source	Fumarate (C)	-0.1	-2.7	-2.3	-4.0	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-2.6	-2.1	-1.3	-3.5
carbon source	D,L-Malic Acid (C)	-0.1	-2.5	-2.3	-3.6	-0.9
carbon source	L-Malic (C)	-0.1	-3.3	-2.4	-2.8	-0.8
carbon source	D,L-Malic Acid (C)	+0.2	-2.2	-2.2	-3.3	+0.0
carbon source	fumaric 20mM	+0.0	-2.5	-2.2	-3.0	+0.0
carbon source	fumaric 20mM	+0.0	-2.1	-2.4	-2.6	-0.1
stress	RCH2_defined_glucose_5mM with D,L-Malic Acid 5 mM	+0.1	-1.7	-1.8	-1.6	-1.9
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.1	-0.3	+0.1	-2.7	-3.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	-0.5	-0.1	-1.5	-4.0
stress	RCH2_defined_glucose_5mM with D,L-Malic Acid 5 mM	+0.1	-1.8	-1.5	-1.1	-1.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.7	-0.0	-1.1	-4.0
carbon source	a-Ketoglutaric (C)	+0.2	-1.8	-1.2	-0.9	-2.0
carbon source	L-Lactate (C)	-0.3	+0.2	+0.1	-2.5	-3.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.2	-0.2	-1.3	-3.8
soil extract	D,L-Malic Acid 5 mM in soil extract	+0.0	-1.4	-1.6	-1.6	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.2	-0.1	-0.2	-1.3	-3.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	-0.5	-0.1	+0.0	-4.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	-0.2	+0.1	-1.5	-3.0
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.1	-0.3	-0.1	-2.3	-2.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.8	-0.0	-0.2	-4.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	+0.1	+0.1	-0.5	-4.2
carbon source	a-Ketoglutaric (C)	+0.2	-1.8	-1.1	-0.9	-1.5
stress	R2A with 3-methyl-3-butenol 4.5 g/L	+0.1	+0.1	+0.1	+0.0	-5.3
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.2	+0.3	-0.1	-1.3	-3.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	+0.2	-0.1	+0.6	-3.8