Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000637 and ABIE53_000638 are separated by 40 nucleotidesABIE53_000638 and ABIE53_000639 are separated by 1061 nucleotidesABIE53_000639 and ABIE53_000640 are separated by 44 nucleotidesABIE53_000640 and ABIE53_000641 are separated by 308 nucleotides ABIE53_000637: ABIE53_000637 - taurine transport system permease protein, at 692,996 to 693,865 _000637 ABIE53_000638: ABIE53_000638 - HAD superfamily hydrolase (TIGR01490 family), at 693,906 to 694,514 _000638 ABIE53_000639: ABIE53_000639 - Na+/phosphate symporter, at 695,576 to 696,493 _000639 ABIE53_000640: ABIE53_000640 - DeoR family fructose operon transcriptional repressor, at 696,538 to 697,308 _000640 ABIE53_000641: ABIE53_000641 - glycerophosphoryl diester phosphodiesterase, at 697,617 to 698,381 _000641
Group Condition ABIE53_000637 ABIE53_000638 ABIE53_000639 ABIE53_000640 ABIE53_000641
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -1.0 -0.5 -1.0 -0.4
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.4 +0.2 -2.0 -0.2
plant outgrowth control Plant outgrowth control -0.2 -0.8 +0.0 -0.6 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -1.2 +0.1 -0.9 -0.4
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -0.1 -0.1 +0.3 -1.4 -0.8
carbon source Acetylated xylan 10 g/L (C) -0.3 +0.2 +0.0 -1.2 -0.7
soil extract Indole-3-pyruvic 5 mM in soil extract +0.0 -0.4 +0.3 -2.1 +0.3
carbon source Acetylated xylan 10 g/L (C) -0.1 +0.3 -0.1 -1.4 -0.4
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.6 +0.2 -0.9 -0.5
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.2 -0.0 +0.1 -2.1 +0.1
stress RCH2_defined_glucose_5mM with Serotonin 5 mM +0.2 -0.2 +0.1 -1.5 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.7 +0.1 -1.1 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -1.4 +0.4 -0.1 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 -0.9 +0.3 -0.2 -0.7
carbon source shik 20mM -0.3 +0.4 +0.2 -1.3 -0.2
carbon source D-Serine (C) -0.0 -0.6 -0.3 -0.7 +0.5
carbon source Glucuronamide (C) -0.0 +0.3 -0.1 -1.8 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.5 +0.1 -1.4 +0.2
stress RCH2_defined_glucose_5mM with Pyruvic 5 mM -0.0 +0.4 +0.4 -0.6 -0.8
carbon source L-Lactate (C) +0.1 +0.6 +0.0 -1.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.4 -0.2 +0.3 -1.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +1.0 -0.1 -0.2 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.0 -0.7 +1.7 -0.7
carbon source m-Inositol (C) +0.2 +0.5 -0.2 -0.7 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.4 +0.1 +0.9 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.6 +0.4 +1.1 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.5 +0.2 +0.9 +0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 +0.4 +0.2 +1.0 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.4 +0.5 +1.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +1.3 +0.6 +2.1 -0.4
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