Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_000627	ABIE53_000628	ABIE53_000629	ABIE53_000630	ABIE53_000631
carbon source	L-Tryptophan (C)	+0.2	+0.2	-0.6	-0.8	N.D.
phage	Burk1_1	-0.2	-0.6	-0.1	+0.3	N.D.
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+0.3	-0.5	-0.0	-0.3	N.D.
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.0	+0.8	-0.2	-1.0	N.D.
carbon source	L-Tryptophan (C)	+0.4	-0.0	-0.3	-0.4	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	-0.2	-0.2	-0.4	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.6	-0.1	-1.0	N.D.
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.4	+0.6	-0.1	-0.2	N.D.
carbon source	Cinnamic and Ethanols	-0.2	+0.1	-0.3	+0.5	N.D.
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.3	+0.1	-0.5	N.D.
carbon source	Citric Acid (C)	+0.2	+0.4	+0.1	-0.6	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.5	+0.0	+0.4	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.2	+0.4	+0.1	-0.5	N.D.
carbon source	D-Lactate (C)	+0.5	+0.6	+0.3	-1.1	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.2	-0.6	+0.3	+0.5	N.D.
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.2	-0.3	+0.4	+0.4	N.D.
stress	RCH2_defined_glucose_5mM with Abietic Acid 5 mM	+0.1	+0.5	-0.2	+0.3	N.D.
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.5	+0.6	-0.0	-0.3	N.D.
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.2	+0.5	-0.2	+0.4	N.D.
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	+0.3	-0.2	+0.5	N.D.
carbon source	D-Lactate (C)	+0.3	+0.3	-0.1	+0.5	N.D.
carbon source	L-Histidine (C)	+0.4	+0.5	-0.1	+0.2	N.D.
carbon source	Acetylated xylan 10 g/L (C)	+0.4	+0.6	-0.3	+0.3	N.D.
carbon source	Acetylated xylan 10 g/L (C)	+0.3	+0.6	-0.2	+0.4	N.D.
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	+0.3	+0.5	-0.1	+0.5	N.D.
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.0	+0.4	+1.0	N.D.
carbon source	D-Mannose (C)	+0.5	+0.2	+0.0	+0.5	N.D.
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	+0.2	+0.5	+0.1	+0.5	N.D.
carbon source	D-Galactose (C)	+0.5	+0.5	+0.1	+0.3	N.D.
carbon source	D-Glucose (C)	+0.5	+0.4	+0.0	+0.4	N.D.