Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_000622	ABIE53_000623	ABIE53_000624	ABIE53_000625	ABIE53_000626
carbon source	D-Alanine (C)	-0.1	-0.3	-0.3	-0.2	-2.5
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-1.8	-0.9	+0.1	-0.2	-0.2
carbon source	D-Alanine (C)	-0.2	-0.1	-0.2	+0.2	-2.5
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.0	-0.4	-0.5	-0.7	+0.1
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-1.0	-0.7	-0.1	-0.1	-0.1
stress	RCH2_defined_glucose_5mM with Cinnamic 5 mM	-1.0	-0.1	-0.1	-0.2	-0.4
nitrogen source	1-aminocyclopropane-1-carboxylate (ACC) (N)	-0.8	+0.2	+0.2	+0.1	-1.5
soil extract	Indole-3-pyruvic 5 mM in soil extract	-1.8	-0.5	+0.2	+0.2	+0.1
nitrogen source	1-aminocyclopropane-1-carboxylate (ACC) (N)	-0.4	+0.1	-0.0	+0.1	-1.3
stress	M9 with Chloride 200 mM	-0.0	-0.6	+0.2	-0.7	-0.5
stress	R2A with Chloride 200 mM	-0.6	-0.1	+0.3	-0.2	-0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	+0.3	-0.2	-0.1	-0.9
stress	R2A with Chloride 200 mM	-0.5	+0.1	+0.3	-0.2	-1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	+0.3	-0.1	-0.3	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.9	-0.2	+0.5	-0.6	-0.0
stress	M9 with 3-methyl-2-butenol 2 g/L	-1.6	-0.4	+0.1	-0.2	+1.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	+0.0	-0.4	-0.4	+0.7
soil extract	Indole-3-pyruvic 5 mM in soil extract	-1.0	-0.3	+0.3	+0.3	+0.2
carbon source	L-Rhamnose (C)	-1.1	-0.0	-0.1	+0.3	+0.4
stress	M9 with 3-methyl-2-butenol 2 g/L	-0.8	-0.3	+0.0	-0.0	+0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	-0.4	+0.1	-0.5	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.3	-0.2	+0.2	-0.7
stress	M9 with 3-methyl-2-butenol 2 g/L	-0.5	-0.3	+0.2	-0.1	+1.0
stress	M9 with 3-methyl-2-butenol 2 g/L	-0.6	-0.4	+0.1	+0.0	+1.2
carbon source	fumaric 20mM	-0.8	-0.0	+0.8	-0.0	+0.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.6	-0.2	-0.5	-0.3	+0.2
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.2	-0.3	+0.1	+0.3	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.2	+0.0	+0.3	-0.4	+0.2
carbon source	Laminarin 10 g/L (C)	+1.1	+0.4	+0.2	-0.0	+0.2
carbon source	Acetylated xylan 10 g/L (C)	+0.8	+0.1	+0.1	+0.4	+0.4