Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000589 and ABIE53_000590 are separated by 46 nucleotidesABIE53_000590 and ABIE53_000591 overlap by 8 nucleotidesABIE53_000591 and ABIE53_000592 are separated by 103 nucleotidesABIE53_000592 and ABIE53_000593 are separated by 231 nucleotides ABIE53_000589: ABIE53_000589 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 646,162 to 646,839 _000589 ABIE53_000590: ABIE53_000590 - acetyl-CoA C-acetyltransferase, at 646,886 to 648,106 _000590 ABIE53_000591: ABIE53_000591 - carbonic anhydrase, at 648,099 to 648,875 _000591 ABIE53_000592: ABIE53_000592 - isocitrate dehydrogenase kinase/phosphatase, at 648,979 to 650,835 _000592 ABIE53_000593: ABIE53_000593 - DNA-binding transcriptional MerR regulator, at 651,067 to 651,534 _000593
Group Condition ABIE53_000589 ABIE53_000590 ABIE53_000591 ABIE53_000592 ABIE53_000593
carbon source Tween 20 (C) -0.3 -0.2 +0.4 -3.3 -0.7
carbon source Tween 20 (C) +0.6 -0.1 -0.1 -3.5 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -1.0 -0.5 -0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -1.6 -0.2 -0.6 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -1.2 -0.8 -0.0 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -1.0 -0.1 -0.3 -0.7
r2a outgrowth control R2A outgrowth control -0.5 -0.3 -0.2 -0.2 -0.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 -0.2 -0.3 -0.5 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.1 -0.6 -0.7 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.2 +0.2 -0.4 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.0 -0.7 +0.1 -0.0 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.6 -0.5 -0.3 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.6 -0.5 -0.4 -0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 +0.5 -0.8 -0.6 -0.3
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 +0.1 +0.4 -0.3 -0.9
carbon source L-Proline (C) -0.4 -1.0 +0.5 +0.1 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.2 -0.3 -0.7 +0.6
carbon source D-Glucose-6-Phosphate (C) -0.5 -0.3 +0.7 +0.1 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.2 -0.4 -0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.6 -0.2 -0.4 +0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.1 -0.9 -0.2 +0.4
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.4 +0.4 -0.2 +0.5 -0.6
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.2 -0.4 -0.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.1 -0.4 -0.9 +0.7
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +1.0 -0.5 -0.6 +0.2
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.2 -0.7 +0.2 +0.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 -0.1 -0.8 -0.1 +0.5
lb_dap plate control LB_DAP agar plate, outgrowth in LB +0.4 -0.7 +0.3 +0.0 +0.5
carbon source butyrate (C) -0.4 +0.4 -0.3 +0.1 +3.9
carbon source butyrate (C) +0.2 +0.2 +0.2 +0.0 +4.2
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