Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000582 and ABIE53_000583 overlap by 95 nucleotidesABIE53_000583 and ABIE53_000584 are separated by 208 nucleotidesABIE53_000584 and ABIE53_000585 are separated by 71 nucleotidesABIE53_000585 and ABIE53_000586 are separated by 11 nucleotides ABIE53_000582: ABIE53_000582 - adhesin HecA-like repeat protein, at 634,007 to 638,518 _000582 ABIE53_000583: ABIE53_000583 - hypothetical protein, at 638,424 to 640,250 _000583 ABIE53_000584: ABIE53_000584 - hypothetical protein, at 640,459 to 640,725 _000584 ABIE53_000585: ABIE53_000585 - hemolysin activation/secretion protein, at 640,797 to 642,551 _000585 ABIE53_000586: ABIE53_000586 - dienelactone hydrolase, at 642,563 to 643,879 _000586
Group Condition ABIE53_000582 ABIE53_000583 ABIE53_000584 ABIE53_000585 ABIE53_000586
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 -1.0 -0.0 -2.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.0 -1.0 +0.3 -2.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.4 -1.3 -0.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.2 -1.0 -0.0 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 -1.7 -0.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.3 -0.8 -0.5 -0.0
carbon source D-Lactate (C) +0.2 -0.1 -1.2 -0.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.2 -1.0 -0.4 +0.0
plant outgrowth control Plant outgrowth control +0.1 -0.4 -1.2 -0.3 +0.2
plant outgrowth control Plant outgrowth control -0.2 -0.3 -0.9 -0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.1 -0.4 -0.2 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 +0.0 +0.0 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -0.0 -1.2 +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.1 -0.7 +0.1 -0.7
stress R2A with Propan-1-ol 13 g/L +0.0 +0.2 -0.3 +0.3 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.5 +0.5 +0.0 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.1 -0.5 +0.2 -0.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +0.1 +0.5 -0.1 -0.8
carbon source D,L-Malic Acid (C) +0.2 +0.2 -1.0 -0.0 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.1 -0.9 -0.3 +1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.0 +0.1 +0.4 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 +0.0 +0.6 +0.4 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 +0.6 +0.3 -0.5
soil extract 2,3-dihydroxybenzoic 5 mM in soil extract +0.1 -0.1 -0.4 -0.1 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.1 +0.7 +0.3 -0.9
soil extract 2,3-dihydroxybenzoic 5 mM in soil extract -0.0 -0.2 -0.3 -0.1 +1.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.1 +1.2 -0.1 -0.3
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.0 -0.0 -0.2 +0.4 +1.2
m9 no stress control M9 no stress control -0.1 +0.2 +0.7 +0.4 +0.2
stress M9 with 3-methyl-2-butenol 2 g/L -0.0 +0.2 +1.2 +0.3 -0.3
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