Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000571 and ABIE53_000572 are separated by 5 nucleotidesABIE53_000572 and ABIE53_000573 are separated by 62 nucleotidesABIE53_000573 and ABIE53_000574 are separated by 36 nucleotidesABIE53_000574 and ABIE53_000575 are separated by 318 nucleotides ABIE53_000571: ABIE53_000571 - putative Fe-S protein YdhL (DUF1289 family), at 622,573 to 622,800 _000571 ABIE53_000572: ABIE53_000572 - prolyl-tRNA editing enzyme YbaK/EbsC (Cys-tRNA(Pro) deacylase), at 622,806 to 623,327 _000572 ABIE53_000573: ABIE53_000573 - hydroxymethylglutaryl-CoA lyase, at 623,390 to 624,316 _000573 ABIE53_000574: ABIE53_000574 - glyoxylate/hydroxypyruvate reductase A, at 624,353 to 625,294 _000574 ABIE53_000575: ABIE53_000575 - putative alpha/beta hydrolase family esterase, at 625,613 to 626,215 _000575
Group Condition ABIE53_000571 ABIE53_000572 ABIE53_000573 ABIE53_000574 ABIE53_000575
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 N.D. -1.9 -0.5 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 N.D. -1.7 -0.5 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 N.D. -1.5 -1.0 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 N.D. -1.3 -0.5 -0.1
carbon source Adenosine (C) -1.1 N.D. -0.2 -0.2 -1.5
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -1.1 N.D. -1.3 -0.2 +0.0
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.9 N.D. -0.5 -1.1 -0.0
stress Growth in presence of pinene -0.7 N.D. -1.5 -0.7 +0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.6 N.D. +0.0 -1.1 +0.3
carbon source Adenosine (C) -1.0 N.D. +0.1 +0.0 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 N.D. -0.9 -0.1 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 N.D. -0.8 -0.8 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -2.0 -0.3 +0.5
lb_dap plate control LB_DAP agar plate, outgrowth in LB +0.1 N.D. -1.6 -0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 N.D. -0.4 +0.4 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 N.D. -0.9 -0.4 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 N.D. -0.8 -0.9 +0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 N.D. -0.6 -0.6 +0.8
carbon source D-Ribose (C) +0.6 N.D. -0.4 +0.5 -1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 N.D. -1.2 -0.5 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 N.D. -1.0 -0.6 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 N.D. -0.7 -0.8 +1.6
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.3 N.D. +0.6 -0.9 +0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 N.D. -0.5 -0.5 +0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 N.D. +0.2 +0.1 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. -1.0 +0.3 +1.6
r2a outgrowth control R2A outgrowth control +1.1 N.D. -0.5 -0.6 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.6 N.D. -1.1 -0.1 +0.6
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +1.3 N.D. +0.3 +0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.4 N.D. -0.4 -0.0 +0.8
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ABIE53_000571
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ABIE53_000572
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ABIE53_000574
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ABIE53_000575
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