Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_000570	ABIE53_000571	ABIE53_000572	ABIE53_000573	ABIE53_000574
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-1.6	N.D.	-1.9	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.7	N.D.	-1.5	-1.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.8	N.D.	-1.7	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-1.1	N.D.	-1.3	-0.5
stress	Growth in presence of pinene	-0.0	-0.7	N.D.	-1.5	-0.7
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.2	-1.1	N.D.	-1.3	-0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-0.5	N.D.	-0.8	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.2	N.D.	-0.7	-0.8
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	+0.2	N.D.	-2.0	-0.3
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.0	-0.9	N.D.	-0.5	-1.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.2	-1.6	N.D.	+0.0	-1.1
plant outgrowth control	Plant outgrowth control	-0.7	-1.1	N.D.	-0.3	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	-1.4	N.D.	-0.9	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	+0.7	N.D.	-0.9	-0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.6	N.D.	-0.8	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	+1.6	N.D.	-1.1	-0.1
r2a outgrowth control	R2A outgrowth control	-0.1	+1.1	N.D.	-0.5	-0.6
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	+0.6	-0.3	N.D.	+0.6	-0.9
carbon source	D-Mannose (C)	+1.5	-0.8	N.D.	-0.1	-0.5
carbon source	Tween 20 (C)	+0.9	+0.3	N.D.	-0.4	-0.7
carbon source	D-Glucuronic Acid (C)	+1.2	-1.1	N.D.	+0.3	+0.1
carbon source	D-Fructose (C)	+1.6	-0.8	N.D.	+0.3	-0.1
carbon source	D-Glucose (C)	+1.2	-0.3	N.D.	+0.5	-0.2
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+1.1	-0.2	N.D.	+0.7	-0.3
carbon source	L-Proline (C)	+1.3	-0.2	N.D.	+0.5	-0.2
carbon source	L-Histidine (C)	+1.4	-0.6	N.D.	+0.5	+0.3
stress	RCH2_defined_glucose_5mM with 2-Deoxy-D-glucose 5 mM	+0.8	+1.0	N.D.	+0.3	-0.3
stress control	RCH2_defined_glucose_5mM with Dimethyl Sulfoxide 1 vol%	+0.6	+1.2	N.D.	+0.4	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+1.3	N.D.	+0.3	+0.3
carbon source	D-Glucose-6-Phosphate (C)	+1.3	+1.0	N.D.	+0.3	+0.4