Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_000528 and ABIE53_000529 are separated by 250 nucleotidesABIE53_000529 and ABIE53_000530 are separated by 62 nucleotidesABIE53_000530 and ABIE53_000531 are separated by 8 nucleotidesABIE53_000531 and ABIE53_000532 overlap by 10 nucleotides ABIE53_000528: ABIE53_000528 - hypothetical protein, at 568,575 to 569,054 _000528 ABIE53_000529: ABIE53_000529 - hypothetical protein, at 569,305 to 569,595 _000529 ABIE53_000530: ABIE53_000530 - putative DNA-binding transcriptional regulator YafY, at 569,658 to 570,581 _000530 ABIE53_000531: ABIE53_000531 - type I restriction enzyme M protein, at 570,590 to 573,070 _000531 ABIE53_000532: ABIE53_000532 - type I restriction enzyme S subunit, at 573,061 to 574,308 _000532
Group Condition ABIE53_000528 ABIE53_000529 ABIE53_000530 ABIE53_000531 ABIE53_000532
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.6 -0.4 -0.1 -0.2
plant outgrowth control Plant outgrowth control -0.4 -0.5 +0.0 -0.0 -0.6
plant outgrowth control Plant outgrowth control -0.4 -0.5 +0.0 -0.0 -0.6
carbon source Shikimic Acid 5 mM (C) -0.4 -0.6 -0.1 -0.1 -0.3
carbon source Shikimic Acid 5 mM (C) -0.3 -0.8 -0.1 -0.2 -0.1
plant outgrowth control Plant outgrowth control -0.2 -0.5 -0.0 -0.1 -0.6
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.3 -0.4 +0.0 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.4 -0.6 +0.1 -0.2
carbon source Acetylated xylan 10 g/L (C) -0.4 -0.5 -0.2 -0.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.3 -0.3 -0.0 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.6 -0.3 -0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.4 -0.1 +0.3 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.6 -0.3 -0.0 -0.3
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 +0.2 -0.2 +0.2 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.5 -0.1 -0.2 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.6 +0.1 +0.2 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.5 +0.2 +0.3 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.2 -0.2 +0.3 +0.3
carbon source D,L-Malic Acid (C) +0.2 -0.2 +0.2 +0.1 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 -0.1 -0.1 +0.1 -0.5
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.3 -0.1 -0.1 +0.5 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.0 +0.1 +0.3 +0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +0.4 -0.3 +0.3 -0.1
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.2 +0.2 -0.2 +0.5 +0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.4 +0.3 +0.2 +0.1
stress M9 with 3-methyl-2-butenol 2 g/L +0.2 +0.4 +0.1 +0.1 +0.6
stress M9 with 3-methyl-2-butenol 2 g/L +0.2 +0.6 +0.1 +0.1 +0.5
soil extract Indole-3-pyruvic 5 mM in soil extract +0.5 +0.0 -0.1 +0.3 +0.8
stress M9 with 3-methyl-2-butenol 2 g/L -0.0 +0.5 +0.4 +0.2 +0.6
stress M9 with 3-methyl-2-butenol 2 g/L +0.0 +0.5 +0.2 +0.2 +0.7
remove
ABIE53_000528
plot		 remove
ABIE53_000529
plot		 remove
ABIE53_000530		 remove
ABIE53_000531
plot		 remove
ABIE53_000532
plot