Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000504 and ABIE53_000505 are separated by 170 nucleotidesABIE53_000505 and ABIE53_000506 are separated by 371 nucleotidesABIE53_000506 and ABIE53_000507 are separated by 30 nucleotidesABIE53_000507 and ABIE53_000508 overlap by 17 nucleotides ABIE53_000504: ABIE53_000504 - DNA invertase Pin-like site-specific DNA recombinase, at 542,343 to 542,933 _000504 ABIE53_000505: ABIE53_000505 - EAL domain-containing protein (putative c-di-GMP-specific phosphodiesterase class I), at 543,104 to 544,429 _000505 ABIE53_000506: ABIE53_000506 - hypothetical protein, at 544,801 to 545,997 _000506 ABIE53_000507: ABIE53_000507 - hypothetical protein, at 546,028 to 547,149 _000507 ABIE53_000508: ABIE53_000508 - UDP-N-acetyl-D-galactosamine dehydrogenase, at 547,133 to 548,434 _000508
Group Condition ABIE53_000504 ABIE53_000505 ABIE53_000506 ABIE53_000507 ABIE53_000508
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.6 -0.5 -1.3 -0.3
plant outgrowth control Plant outgrowth control -1.1 -0.4 -0.7 -0.2 -0.4
plant outgrowth control Plant outgrowth control -1.6 -0.1 -0.4 -0.2 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.7 -0.8 -0.7 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.1 -0.6 -0.1 -0.2 -0.4
plant outgrowth control Plant outgrowth control -0.6 -0.3 -0.5 -0.5 -0.4
r2a outgrowth control R2A outgrowth control -1.7 -0.0 -0.1 -0.1 -0.2
plant outgrowth control Plant outgrowth control -1.4 -0.2 -0.3 -0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.1 -0.2 -0.0 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.1 -0.7 -0.9 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.4 -0.6 -0.1 -0.6
carbon source Shikimic Acid 5 mM (C) +0.5 -0.0 -0.4 -0.7 -0.5
carbon source Acetylated xylan 10 g/L (C) +1.2 -0.1 -0.5 -0.2 -0.5
carbon source Azelaic 20 mM (C) +1.0 +0.1 -0.7 -0.3 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 -0.4 -0.6 -0.1 -0.1
carbon source D-Fructose (C) +1.0 -0.6 -0.3 +0.1 -0.1
carbon source L-Proline (C) +0.8 -0.3 -0.4 +0.5 -0.4
carbon source D-Trehalose (C) +1.3 -0.4 -0.3 +0.1 -0.2
carbon source D-Gluconic Acid (C) +1.2 -0.4 -0.2 +0.2 -0.2
carbon source D-Xylose (C) +1.4 -0.1 -0.3 +0.1 -0.2
carbon source D-Galactose (C) +1.1 -0.2 -0.1 +0.5 -0.4
stress RCH2_defined_glucose_5mM with Lumichrome 5 mM +1.4 -0.3 -0.1 +0.1 -0.2
stress R2A with Tricalcium phosphate 0.5 g/L +1.5 +0.2 -0.2 -0.3 -0.2
carbon source D-Mannose (C) +1.3 -0.4 -0.0 +0.5 -0.3
carbon source Xylitol (C) +1.6 -0.3 -0.2 +0.4 -0.3
carbon source D-Glucose-6-Phosphate (C) +1.4 -0.4 +0.0 +0.6 -0.4
carbon source L-Fucose (C) +1.6 -0.4 +0.0 +0.2 -0.1
carbon source D-Sorbitol (C) +1.4 -0.5 +0.2 +0.7 -0.1
stress RCH2_defined_glucose_5mM with Adenine 5 mM +1.5 -0.0 -0.1 +0.3 -0.0
soil extract Adenine 5 mM in soil extract +1.4 -0.2 +0.1 +0.3 +0.1
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