Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_000460 and ABIE53_000461 are separated by 468 nucleotidesABIE53_000461 and ABIE53_000462 are separated by 253 nucleotidesABIE53_000462 and ABIE53_000463 are separated by 291 nucleotidesABIE53_000463 and ABIE53_000464 are separated by 395 nucleotides ABIE53_000460: ABIE53_000460 - nitronate monooxygenase, at 495,706 to 496,818 _000460 ABIE53_000461: ABIE53_000461 - branched-chain amino acid transport system substrate-binding protein, at 497,287 to 498,432 _000461 ABIE53_000462: ABIE53_000462 - fucose permease, at 498,686 to 499,897 _000462 ABIE53_000463: ABIE53_000463 - hypothetical protein, at 500,189 to 500,851 _000463 ABIE53_000464: ABIE53_000464 - DNA-binding protein H-NS, at 501,247 to 501,549 _000464
Group Condition ABIE53_000460 ABIE53_000461 ABIE53_000462 ABIE53_000463 ABIE53_000464
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -2.3 -0.1 -0.8 -4.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -2.5 -0.0 -0.8 -4.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -1.9 +0.0 -1.1 -4.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -3.0 +0.5 -0.4 -3.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -2.0 -0.2 -1.0 -2.9
carbon source L-Tryptophan (C) +0.0 -3.1 -0.2 -0.3 -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.1 -0.2 -0.3 -3.3
r2a outgrowth control R2A outgrowth control +0.0 +0.0 -0.1 -0.6 -4.3
carbon source L-Tryptophan (C) -0.0 -2.8 -0.1 -0.3 -1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.0 -0.1 -0.4 -3.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -2.3 +0.4 -0.6 -2.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -1.6 -0.3 -0.6 -2.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.8 -0.3 -0.7 -3.1
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.2 -0.4 +0.1 -0.2 -4.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -0.6 -0.2 -0.6 -3.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 -1.3 -0.5 -0.1 -2.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -2.4 +0.0 -0.4 -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -2.0 -0.1 +0.2 -2.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 -2.6 -0.0 -0.2 -2.3
stress R2A with Propan-1-ol 13 g/L -0.1 +0.0 -0.1 -0.0 -4.0
r2a outgrowth control R2A outgrowth control -0.0 +0.1 -0.2 -0.4 -3.7
r2a outgrowth control R2A outgrowth control -0.2 +0.1 -0.1 -0.4 -3.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.7 +0.3 -0.6 -2.9
phage Burk2_10 -0.0 -0.1 +0.6 -0.4 -3.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.1 +0.2 -0.1 -3.3
carbon source 4-Hydroxybenzoic Acid (C) -0.2 +0.5 +0.1 -0.1 +3.9
biofilm biofilm; planktonic cells from 96 well plate assay in R2A -0.0 +0.1 +0.2 +0.6 +4.6
biofilm biofilm; planktonic cells from 96 well plate assay in R2A +0.1 +0.2 +0.3 +0.5 +4.5
biofilm biofilm; attached cells from 96 well plate assay in R2A -0.1 +0.1 +0.2 +0.2 +5.5
biofilm biofilm; attached cells from 96 well plate assay in R2A +0.0 +0.0 +0.2 +0.2 +5.6
remove
ABIE53_000460
plot		 remove
ABIE53_000461
plot		 remove
ABIE53_000462		 remove
ABIE53_000463
plot		 remove
ABIE53_000464
plot