Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_000423 and ABIE53_000424 are separated by 608 nucleotidesABIE53_000424 and ABIE53_000425 are separated by 210 nucleotidesABIE53_000425 and ABIE53_000426 are separated by 90 nucleotidesABIE53_000426 and ABIE53_000427 are separated by 72 nucleotides ABIE53_000423: ABIE53_000423 - DnaK suppressor protein, at 457,985 to 458,404 _000423 ABIE53_000424: ABIE53_000424 - G3E family GTPase, at 459,013 to 460,137 _000424 ABIE53_000425: ABIE53_000425 - 23S rRNA (cytosine1962-C5)-methyltransferase, at 460,348 to 461,550 _000425 ABIE53_000426: ABIE53_000426 - integrase/recombinase XerC, at 461,641 to 462,564 _000426 ABIE53_000427: ABIE53_000427 - uncharacterized protein YigA (DUF484 family), at 462,637 to 463,392 _000427
Group Condition ABIE53_000423 ABIE53_000424 ABIE53_000425 ABIE53_000426 ABIE53_000427
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -4.2 -0.2 -0.0 N.D. -4.5
carbon source L-Tryptophan (C) -5.3 -0.1 +0.1 N.D. -3.6
carbon source shik 5mM -6.0 +0.0 +0.0 N.D. -2.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -6.0 +0.3 +0.1 N.D. -2.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -5.5 +0.3 -0.2 N.D. -2.5
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -4.8 -0.1 +0.2 N.D. -3.3
carbon source D-Lactate (C) -4.3 -1.7 +0.2 N.D. -2.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.2 -0.2 -0.5 N.D. -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -5.7 +0.9 +0.1 N.D. -3.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.5 -0.0 +0.2 N.D. -2.3
carbon source D-Arabinose (C) -5.3 -0.7 +0.1 N.D. -1.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.5 +0.2 +0.2 N.D. -2.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.9 +0.0 -0.4 N.D. -3.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -5.5 +1.1 -0.1 N.D. -3.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -5.3 +0.4 -0.0 N.D. -2.4
stress M9 with Ethanol 2.5 vol% -1.4 -0.1 +0.1 N.D. -6.0
carbon source D-Arabinose (C) -5.5 -0.8 +0.0 N.D. -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.2 +0.1 +0.1 N.D. -3.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -3.3 +0.5 -0.4 N.D. -4.0
carbon source L-Lactate (C) -5.6 +0.4 +0.1 N.D. -1.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.5 +0.4 -0.1 N.D. -1.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.5 +0.2 +0.0 N.D. -1.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -3.2 +0.4 -0.1 N.D. -3.9
carbon source D-Alanine (C) -5.6 +0.2 -0.0 N.D. -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.7 +0.4 -0.0 N.D. -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.3 +0.4 +0.1 N.D. -1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -4.6 +0.6 -0.1 N.D. -2.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.3 +1.1 -0.1 N.D. -1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -5.2 +0.7 +0.2 N.D. -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -5.0 +0.9 -0.1 N.D. -1.3
remove
ABIE53_000423
plot		 remove
ABIE53_000424
plot		 remove
ABIE53_000425		 remove
ABIE53_000426
plot		 remove
ABIE53_000427
plot