Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000416 and ABIE53_000417 are separated by 103 nucleotidesABIE53_000417 and ABIE53_000418 are separated by 542 nucleotidesABIE53_000418 and ABIE53_000419 are separated by 112 nucleotidesABIE53_000419 and ABIE53_000420 overlap by 4 nucleotides ABIE53_000416: ABIE53_000416 - pyrimidine 5'-nucleotidase, at 449,794 to 450,597 _000416 ABIE53_000417: ABIE53_000417 - acetylglutamate kinase, at 450,701 to 451,600 _000417 ABIE53_000418: ABIE53_000418 - Flp pilus assembly protein TadD, at 452,143 to 453,771 _000418 ABIE53_000419: ABIE53_000419 - two-component system sensor histidine kinase RegB, at 453,884 to 455,194 _000419 ABIE53_000420: ABIE53_000420 - two-component system response regulator RegA, at 455,191 to 455,733 _000420
Group Condition ABIE53_000416 ABIE53_000417 ABIE53_000418 ABIE53_000419 ABIE53_000420
stress M9 with Isopropyl alcohol 21 g/L -0.1 N.D. -0.2 -4.1 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L -0.2 N.D. -0.1 -3.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. -0.0 -3.6 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. +0.1 -3.8 N.D.
phage Burk2_10 -0.1 N.D. -0.0 -3.4 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 N.D. +0.3 -3.4 N.D.
phage Burk2_1 -0.1 N.D. +0.1 -3.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. -0.3 -2.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -0.1 -3.3 N.D.
carbon source butyrate (C) -0.2 N.D. -0.0 -2.9 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 N.D. +0.2 -3.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 N.D. +0.0 -3.1 N.D.
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.1 N.D. -0.0 -3.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. +0.0 -3.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 N.D. +0.1 -3.0 N.D.
carbon source Beta-Lactose (C) +0.1 N.D. -0.0 -3.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.0 N.D. +0.1 -3.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 N.D. +0.2 -2.6 N.D.
carbon source D-Raffinose (C) +0.2 N.D. +0.1 -3.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 N.D. +0.1 -2.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 N.D. +0.2 -2.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 N.D. +0.4 -2.7 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.6 N.D. +0.2 +2.8 N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.0 N.D. -0.2 +3.4 N.D.
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM +0.2 N.D. +0.1 +2.9 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.0 N.D. +0.1 +3.3 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.2 N.D. -0.0 +3.9 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.1 N.D. +0.4 +3.6 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract +0.3 N.D. -0.2 +6.7 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract +0.2 N.D. -0.3 +7.2 N.D.
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