Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000368 and ABIE53_000369 are separated by 243 nucleotidesABIE53_000369 and ABIE53_000370 are separated by 130 nucleotidesABIE53_000370 and ABIE53_000371 are separated by 150 nucleotidesABIE53_000371 and ABIE53_000372 are separated by 48 nucleotides ABIE53_000368: ABIE53_000368 - ATP-independent RNA helicase DbpA, at 396,075 to 397,478 _000368 ABIE53_000369: ABIE53_000369 - methionine aminotransferase, at 397,722 to 398,876 _000369 ABIE53_000370: ABIE53_000370 - lysine/arginine/ornithine transport system substrate-binding protein, at 399,007 to 399,801 _000370 ABIE53_000371: ABIE53_000371 - AraC-like DNA-binding protein, at 399,952 to 400,797 _000371 ABIE53_000372: ABIE53_000372 - threonine/homoserine/homoserine lactone efflux protein, at 400,846 to 401,433 _000372
Group Condition ABIE53_000368 ABIE53_000369 ABIE53_000370 ABIE53_000371 ABIE53_000372
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.0 -0.5 -0.1 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.5 -1.1 +0.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -1.3 -0.4 +0.1 +0.1
plant outgrowth control Plant outgrowth control +0.3 -0.2 -0.8 -0.4 -0.2
carbon source L-Tryptophan (C) +0.1 -0.2 -1.2 +0.2 +0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 +0.6 -0.9 -0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.6 -0.7 -0.1 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.4 -0.9 -0.0 -0.1
carbon source Glucuronamide (C) -0.1 +0.4 -1.0 -0.2 +0.1
plant outgrowth control Plant outgrowth control +0.4 +0.1 -1.1 -0.2 +0.0
plant outgrowth control Plant outgrowth control +0.3 +0.5 -1.7 -0.0 +0.1
phage Burk1_100 -0.4 -0.7 +0.3 +0.2 -0.1
carbon source D-Fructose (C) -0.7 -0.4 -0.3 +0.5 +0.2
plant outgrowth control Plant outgrowth control +0.0 +0.2 -1.1 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 +0.7 -0.3 +0.0 -0.5
carbon source D-Glucose (C) -0.3 -0.2 -0.4 +0.5 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.8 -1.3 -0.1 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +1.0 -1.2 +0.1 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.6 -0.7 -0.0 +0.4
carbon source Tween 20 (C) -0.2 +0.4 -0.6 +0.6 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.5 +0.7 +0.2 +0.3
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.2 +1.0 +0.1 -0.4 -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +1.4 -0.8 +0.0 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +1.3 -0.5 +0.1 -0.1
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.2 +1.4 -0.4 +0.1
carbon source L-Histidine (C) -0.2 -0.3 +0.6 +0.6 +0.2
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.1 +1.1 +0.5 -0.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.4 +0.7 -0.2 +0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +1.7 -0.5 +0.4 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.2 -0.1 +0.1 +0.7
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