Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000325 and ABIE53_000326 are separated by 273 nucleotidesABIE53_000326 and ABIE53_000327 are separated by 388 nucleotidesABIE53_000327 and ABIE53_000328 are separated by 64 nucleotidesABIE53_000328 and ABIE53_000329 are separated by 255 nucleotides ABIE53_000325: ABIE53_000325 - L-arabonate dehydrase, at 343,697 to 345,430 _000325 ABIE53_000326: ABIE53_000326 - hypothetical protein, at 345,704 to 346,042 _000326 ABIE53_000327: ABIE53_000327 - hypothetical protein, at 346,431 to 346,721 _000327 ABIE53_000328: ABIE53_000328 - histidine triad (HIT) family protein, at 346,786 to 347,211 _000328 ABIE53_000329: ABIE53_000329 - hypothetical protein, at 347,467 to 347,799 _000329
Group Condition ABIE53_000325 ABIE53_000326 ABIE53_000327 ABIE53_000328 ABIE53_000329
carbon source L-Arabinose (C) -4.3 -0.0 +0.2 +0.0 -0.0
carbon source L-Arabinose (C) -3.9 +0.2 +0.1 -0.0 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 +0.3 -0.7 -0.8 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.9 -0.7 -0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -0.1 -0.5 -0.3 +0.1
carbon source Pectin 10 g/L (C) -1.3 -0.5 -0.1 -0.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.4 -0.4 +0.0 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 +0.6 +0.1 -0.8 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -1.0 -0.1 +0.1 +0.0
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 -0.4 -0.5 +0.1 -0.0
nitrogen source histamine 2mM N source -0.2 -1.0 +0.3 -0.9 +0.0
carbon source D,L-Malic Acid (C) +0.4 -0.5 -0.1 -0.8 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 +0.5 -0.8 -0.1 -0.3
plant outgrowth control Plant outgrowth control +0.4 -0.8 -0.5 +0.2 -0.2
plant outgrowth control Plant outgrowth control +0.7 -1.0 -0.9 +0.3 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.6 -0.6 +0.3 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.6 +1.1 -0.6 -0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 +1.3 -0.2 -0.2 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.4 +0.2 -0.3 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.9 +2.2 +0.1 +0.1 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +1.2 -0.2 -0.1 +0.0
soil extract Indole-3-pyruvic 5 mM in soil extract +0.4 +1.0 +0.4 -0.4 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.2 +0.8 -0.5 +0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 +0.7 +0.1 -0.4 +0.6
carbon source D-Lactate (C) +0.1 +1.2 +0.5 +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.7 +1.3 +0.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 +1.1 +0.1 +0.0 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 +2.4 -0.0 +0.3 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.6 +1.0 +0.5 -0.2 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 +1.4 +0.4 -0.3 -0.1
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ABIE53_000325
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ABIE53_000326
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ABIE53_000328
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ABIE53_000329
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