Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000309 and ABIE53_000310 are separated by 217 nucleotidesABIE53_000310 and ABIE53_000311 are separated by 131 nucleotidesABIE53_000311 and ABIE53_000312 are separated by 19 nucleotidesABIE53_000312 and ABIE53_000313 are separated by 133 nucleotides ABIE53_000309: ABIE53_000309 - hypothetical protein, at 327,978 to 328,403 _000309 ABIE53_000310: ABIE53_000310 - DNA-binding MarR family transcriptional regulator, at 328,621 to 329,166 _000310 ABIE53_000311: ABIE53_000311 - DHA2 family multidrug resistance protein, at 329,298 to 330,896 _000311 ABIE53_000312: ABIE53_000312 - hypothetical protein, at 330,916 to 331,446 _000312 ABIE53_000313: ABIE53_000313 - glutamate--cysteine ligase, at 331,580 to 333,226 _000313
Group Condition ABIE53_000309 ABIE53_000310 ABIE53_000311 ABIE53_000312 ABIE53_000313
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 -0.7 +0.1 -0.2 -2.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.1 -0.3 -0.1 -4.1
carbon source Acetylated xylan 10 g/L (C) -0.6 -0.1 -0.0 +0.1 -4.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 -0.2 -0.0 +0.1 -2.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.1 -0.1 +0.1 -4.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 -0.2 +0.0 -3.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.0 -0.1 -0.2 -3.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.7 -0.1 +0.1 -3.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.1 +0.0 +0.0 -4.0
stress R2A with 3-methyl-3-butenol 4.5 g/L -0.3 -0.4 +0.0 +0.0 -3.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.0 -0.2 +0.3 +0.2 -1.6
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.1 -0.4 +0.1 -0.0 -3.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -0.7 +0.1 +0.2 -3.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.3 +0.0 +0.2 -3.3
stress R2A with Isopropyl alcohol 21 g/L -0.5 +0.2 +0.0 -0.0 -3.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -0.2 +0.1 -0.0 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.3 +0.0 -0.2 -3.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 -0.5 -0.0 +0.4 -2.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.5 -0.1 +0.1 -3.7
carbon source Acetylated xylan 10 g/L (C) +0.2 -0.2 +0.1 -0.1 -3.9
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -0.2 +0.0 +0.2 +0.0 -4.0
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.5 -0.2 +0.3 +0.2 -3.6
stress R2A with 3-methyl-3-butenol 4.5 g/L +0.5 -0.2 -0.1 +0.1 -4.0
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -0.6 -0.4 +0.3 +0.1 -2.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 +0.8 +0.1 +0.2 -2.3
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.2 -0.1 +0.3 +0.2 -3.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.6 -0.0 +0.1 -3.8
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.8 +0.3 +0.1 -0.1 -3.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.4 +0.3 +0.2 -3.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 +0.2 +0.1 +0.0 -3.0
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ABIE53_000309
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ABIE53_000310
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ABIE53_000312
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ABIE53_000313
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