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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia graminis OAS925
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE53_000256 and ABIE53_000257 overlap by 38 nucleotides
ABIE53_000257 and ABIE53_000258 are separated by 135 nucleotides
ABIE53_000258 and ABIE53_000259 are separated by 81 nucleotides
ABIE53_000259 and ABIE53_000260 are separated by 184 nucleotides
ABIE53_000256: ABIE53_000256 - ATP synthase F0 subunit b, at 272,272 to 272,517
_000256
ABIE53_000257: ABIE53_000257 - ATP synthase F0 subunit b, at 272,480 to 272,743
_000257
ABIE53_000258: ABIE53_000258 - F-type H+-transporting ATPase subunit c, at 272,879 to 273,148
_000258
ABIE53_000259: ABIE53_000259 - F-type H+-transporting ATPase subunit a, at 273,230 to 274,054
_000259
ABIE53_000260: ABIE53_000260 - ATP synthase protein I, at 274,239 to 274,793
_000260
Group
Condition
ABIE53
_000256
ABIE53
_000257
ABIE53
_000258
ABIE53
_000259
ABIE53
_000260
in planta
Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
N.D.
N.D.
N.D.
N.D.
-2.0
soil extract
Indole-3-pyruvic 5 mM in soil extract
N.D.
N.D.
N.D.
N.D.
-1.5
stress
RCH2_defined_glucose_5mM with Pyridoxal 1 mM
N.D.
N.D.
N.D.
N.D.
-1.4
in planta
Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
N.D.
N.D.
N.D.
N.D.
-1.3
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.3
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.3
in planta
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
N.D.
N.D.
N.D.
N.D.
-1.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.3
soil extract
Indole-3-pyruvic 5 mM in soil extract
N.D.
N.D.
N.D.
N.D.
-1.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
N.D.
N.D.
N.D.
N.D.
-1.2
stress
RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
N.D.
N.D.
N.D.
N.D.
-1.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
N.D.
N.D.
N.D.
N.D.
-1.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
N.D.
N.D.
N.D.
N.D.
-1.1
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.1
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.1
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.1
stress
RCH2_defined_glucose_5mM with Abietic Acid 5 mM
N.D.
N.D.
N.D.
N.D.
-1.1
stress
RCH2_defined_glucose_5mM with Pyridoxal 0.5 mM
N.D.
N.D.
N.D.
N.D.
-1.1
carbon source
butyrate (C)
N.D.
N.D.
N.D.
N.D.
-1.1
stress
RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM
N.D.
N.D.
N.D.
N.D.
-1.0
motility_chemotaxis
Motility_chemotaxis, R2A; outer cut
N.D.
N.D.
N.D.
N.D.
-1.0
in planta
Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
N.D.
N.D.
N.D.
N.D.
-1.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-1.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
N.D.
N.D.
N.D.
N.D.
-1.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
N.D.
N.D.
N.D.
N.D.
-0.9
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