Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000243 and ABIE53_000244 overlap by 62 nucleotidesABIE53_000244 and ABIE53_000245 are separated by 307 nucleotidesABIE53_000245 and ABIE53_000246 are separated by 322 nucleotidesABIE53_000246 and ABIE53_000247 are separated by 475 nucleotides ABIE53_000243: ABIE53_000243 - delta 1-pyrroline-5-carboxylate dehydrogenase, at 254,574 to 254,927 _000243 ABIE53_000244: ABIE53_000244 - RHH-type proline utilization regulon transcriptional repressor/proline dehydrogenase/delta 1-pyrroline-5-carboxylate dehydrogenase, at 254,866 to 258,522 _000244 ABIE53_000245: ABIE53_000245 - hypothetical protein, at 258,830 to 258,982 _000245 ABIE53_000246: ABIE53_000246 - primosomal protein N, at 259,305 to 261,554 _000246 ABIE53_000247: ABIE53_000247 - uroporphyrinogen decarboxylase, at 262,030 to 263,130 _000247
Group Condition ABIE53_000243 ABIE53_000244 ABIE53_000245 ABIE53_000246 ABIE53_000247
soil extract L-Proline 5 mM in soil extract -4.0 -3.8 -0.2 N.D. N.D.
carbon source L-Proline (C) -4.4 -4.0 +0.4 N.D. N.D.
soil extract L-Proline 5 mM in soil extract -3.6 -3.4 +0.1 N.D. N.D.
carbon source L-Proline (C) -3.8 -3.7 +1.0 N.D. N.D.
stress RCH2_defined_glucose_5mM with L-Proline 5 mM -3.8 -2.6 -0.0 N.D. N.D.
stress RCH2_defined_glucose_5mM with L-Proline 5 mM -3.0 -2.9 -0.1 N.D. N.D.
stress RCH2_defined_glucose_5mM with Salicylic 5 mM -2.8 -1.6 -0.4 N.D. N.D.
carbon source D-Arabinose (C) -2.5 -2.1 +0.1 N.D. N.D.
carbon source D-Arabinose (C) -1.7 -2.2 +0.4 N.D. N.D.
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -1.9 -1.3 -0.3 N.D. N.D.
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -1.9 -1.3 -0.1 N.D. N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -1.9 -1.0 -0.2 N.D. N.D.
carbon source L-Alanine (C) -1.6 -0.9 -0.4 N.D. N.D.
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -1.6 -1.1 -0.2 N.D. N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -1.7 -1.0 -0.1 N.D. N.D.
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -1.4 -1.3 -0.2 N.D. N.D.
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -1.4 -1.2 -0.3 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -1.0 -0.0 N.D. N.D.
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -1.3 -1.1 -0.4 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -1.1 -0.7 N.D. N.D.
stress RCH2_defined_glucose_5mM with Chlorogenic 2 mM -1.5 -1.0 -0.1 N.D. N.D.
carbon source L-Asparagine (C) +1.3 +1.2 -0.8 N.D. N.D.
carbon source L-Asparagine (C) +1.2 +1.3 -0.8 N.D. N.D.
carbon source L-Glutamic (C) +1.0 +1.4 -0.4 N.D. N.D.
carbon source L-Glutamic (C) +1.1 +1.5 -0.2 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 +1.3 -0.2 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 +1.8 +0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.9 +1.7 +0.3 N.D. N.D.
carbon source L-Tryptophan (C) +1.7 +1.7 -0.3 N.D. N.D.
carbon source L-Tryptophan (C) +1.9 +1.8 -0.1 N.D. N.D.
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ABIE53_000243
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ABIE53_000244
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ABIE53_000246
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ABIE53_000247
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