Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000236 and ABIE53_000237 are separated by 71 nucleotidesABIE53_000237 and ABIE53_000238 are separated by 70 nucleotidesABIE53_000238 and ABIE53_000239 are separated by 115 nucleotidesABIE53_000239 and ABIE53_000240 are separated by 29 nucleotides ABIE53_000236: ABIE53_000236 - aminomethyltransferase, at 244,015 to 245,133 _000236 ABIE53_000237: ABIE53_000237 - glycine cleavage system H protein, at 245,205 to 245,585 _000237 ABIE53_000238: ABIE53_000238 - glycine dehydrogenase, at 245,656 to 248,592 _000238 ABIE53_000239: ABIE53_000239 - hypothetical protein, at 248,708 to 249,838 _000239 ABIE53_000240: ABIE53_000240 - L-serine dehydratase, at 249,868 to 251,256 _000240
Group Condition ABIE53_000236 ABIE53_000237 ABIE53_000238 ABIE53_000239 ABIE53_000240
carbon source L-Threonine (C) -2.3 -3.5 -1.6 +0.0 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -2.2 -2.1 -0.6 -1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 -2.3 -2.2 -0.0 -1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -2.9 -1.3 -0.7 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 -2.2 -2.2 +0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 -1.8 -1.9 -0.2 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -2.1 -1.5 -0.4 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 -0.8 -1.3 -1.5 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.7 -2.5 -1.9 +0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -2.4 -1.4 -0.2 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 -1.0 -1.1 -0.9 -0.4
carbon source butyrate (C) -2.3 -1.5 -1.8 -0.1 -0.1
carbon source butyrate (C) -2.0 -2.1 -1.7 +0.0 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -1.0 -1.6 -1.0 -0.7
carbon source L-Threonine (C) -1.8 -1.4 -1.3 -0.0 -0.9
carbon source acetate (C) -1.4 -2.1 -1.7 -0.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -1.4 -1.7 -0.2 -1.1
carbon source acetate (C) -2.1 -1.2 -1.7 -0.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.2 -1.5 -1.7 -0.3 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 -2.0 -1.3 -0.5 -0.3
carbon source succinate (C) -1.5 -2.1 -1.2 -0.3 -0.1
carbon source Acetylated xylan 10 g/L (C) -1.3 -1.7 -0.8 -1.6 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -1.4 -1.6 +0.3 -0.4
carbon source Tween 20 (C) -1.1 -1.6 -2.1 +0.1 +0.2
carbon source Tween 20 (C) -1.6 -1.0 -2.0 +0.3 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.3 -1.4 -1.5 +0.6 -0.2
carbon source L-Serine (C) -1.7 +2.3 -1.5 +4.6 -2.9
carbon source D-Serine (C) -2.0 +2.6 -1.2 +5.3 -3.1
carbon source L-Serine (C) -1.7 +2.8 -1.2 +5.0 -2.8
carbon source D-Serine (C) -1.4 +2.5 -1.3 +5.3 -2.6
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