Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000230 and ABIE53_003807 are separated by 103 nucleotidesABIE53_003807 and ABIE53_000231 are separated by 310 nucleotidesABIE53_000231 and ABIE53_000232 are separated by 109 nucleotidesABIE53_000232 and ABIE53_000233 are separated by 158 nucleotides ABIE53_000230: ABIE53_000230 - hypothetical protein, at 235,717 to 237,135 _000230 ABIE53_003807: ABIE53_003807 - tRNA-Arg, at 237,239 to 237,314 _003807 ABIE53_000231: ABIE53_000231 - cytochrome c5, at 237,625 to 238,542 _000231 ABIE53_000232: ABIE53_000232 - hypothetical protein, at 238,652 to 239,227 _000232 ABIE53_000233: ABIE53_000233 - ATP-dependent DNA helicase Rep, at 239,386 to 241,491 _000233
Group Condition ABIE53_000230 ABIE53_003807 ABIE53_000231 ABIE53_000232 ABIE53_000233
carbon source D-Lactate (C) -0.1 N.D. -1.4 -0.1 N.D.
carbon source D-Lactate (C) +0.0 N.D. -1.4 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. -0.9 -0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. -0.9 -0.1 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.2 N.D. -0.4 -0.3 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.2 N.D. -0.4 -0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. -1.0 +0.2 N.D.
carbon source L-Serine (C) -0.2 N.D. -0.5 -0.0 N.D.
carbon source D-Arabinose (C) -0.2 N.D. -0.5 -0.0 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 N.D. -0.5 +0.0 N.D.
carbon source butyrate (C) -0.0 N.D. -0.6 -0.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 N.D. -0.7 +0.2 N.D.
carbon source Inosine (C) +0.1 N.D. -0.8 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 N.D. -0.4 -0.3 N.D.
carbon source Beta-Lactose (C) -0.1 N.D. -0.6 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 N.D. -0.7 +0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. -0.7 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. -0.7 +0.3 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract +0.2 N.D. -0.3 -0.3 N.D.
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -0.1 N.D. -0.5 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.6 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.5 +0.1 N.D.
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.1 N.D. +0.2 -0.5 N.D.
carbon source Glucuronamide (C) -0.0 N.D. -0.4 +0.3 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 N.D. -0.4 +0.3 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 N.D. -0.4 +0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.5 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 N.D. -0.3 +0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -0.4 +0.4 N.D.
carbon source D-Serine (C) +0.2 N.D. -0.2 +0.3 N.D.
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