Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_000220	ABIE53_000221	ABIE53_000222	ABIE53_000223	ABIE53_000224
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	-0.9	-0.2	-0.2	-1.1	-0.1
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	-0.4	-0.0	-0.3	-1.5	-0.1
carbon source	D-Alanine (C)	+0.1	+0.1	-0.5	-2.0	+0.1
m9 no stress control	M9 no stress control	-0.3	-0.3	-0.5	-1.2	-0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.1	-0.6	-1.5	-0.1
r2a shaking control	R2A shaking control	-0.1	+0.0	-0.3	-1.8	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	-0.3	+0.2	-1.0	-0.3
stress	R2A with Salicylic 10 uM	-0.4	-0.2	-0.1	-1.5	+0.2
nitrogen source	Ammonium chloride 0.5 mM (N)	-0.1	-0.2	-0.0	-1.7	+0.3
nitrogen source	histamine 2mM N source	+0.5	+0.0	-0.6	-1.3	-0.5
carbon source	D-Serine (C)	+0.2	-0.2	-0.6	-0.8	-0.2
stress	RCH2_defined_glucose_5mM with Epiandrosterone 5 mM	+0.1	-0.2	+0.2	-1.5	-0.0
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.4	+0.1	+0.3	-1.3	-0.1
carbon source	Pectin 10 g/L (C)	+0.1	-0.1	-0.3	-1.2	+0.2
stress	R2A with Quartz_sand 500 g/L	-0.4	-0.1	+0.1	-1.1	+0.3
soil extract	Indole-3-pyruvic 5 mM in soil extract	-0.1	-0.2	+0.2	-1.3	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.6	-0.7	-0.2	+0.5	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.3	+0.1	-0.6	-0.8	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.4	+0.3	-1.0	+0.2
carbon source	D-Gluconic Acid (C)	-0.2	+0.2	-0.8	+0.6	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	-0.2	-0.1	+1.4	-0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.6	-0.6	+0.7	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.7	+0.0	+0.5	+1.1	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	+0.1	-0.4	+1.5	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	+0.0	+0.8	+1.0	-0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.2	+0.5	+1.6	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	-0.3	+0.6	+1.6	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.3	+0.4	+0.8	+0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.4	-0.1	+1.0	+0.8	+0.6
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	+0.4	+0.0	+2.8	+0.2