Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_000219	ABIE53_000220	ABIE53_000221	ABIE53_000222	ABIE53_000223
m9 no stress control	M9 no stress control	-0.1	-0.3	-0.3	-0.5	-1.2
carbon source	D-Alanine (C)	+0.1	+0.1	+0.1	-0.5	-2.0
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	+0.3	-0.4	-0.0	-0.3	-1.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	-0.6	-0.3	+0.2	-1.0
r2a shaking control	R2A shaking control	+0.3	-0.1	+0.0	-0.3	-1.8
stress	R2A with Salicylic 10 uM	+0.2	-0.4	-0.2	-0.1	-1.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.1	-0.1	-0.6	-1.5
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	+0.6	-0.9	-0.2	-0.2	-1.1
nitrogen source	Ammonium chloride 0.5 mM (N)	+0.3	-0.1	-0.2	-0.0	-1.7
stress	RCH2_defined_glucose_5mM with Epiandrosterone 5 mM	+0.1	+0.1	-0.2	+0.2	-1.5
carbon source	Pectin 10 g/L (C)	+0.3	+0.1	-0.1	-0.3	-1.2
nitrogen source	histamine 2mM N source	+0.1	+0.5	+0.0	-0.6	-1.3
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.3	-0.4	+0.1	+0.3	-1.3
carbon source	D-Serine (C)	+0.3	+0.2	-0.2	-0.6	-0.8
biofilm	biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound	+0.5	-0.2	-0.0	+0.0	-1.4
plant outgrowth control	Plant outgrowth control	+0.4	+0.2	-0.1	+0.1	-1.4
carbon source	L-Histidine (C)	+0.7	-0.4	+0.2	-0.0	-1.0
r2a no shaking	R2A no shaking	+0.8	-0.4	+0.1	-0.2	-0.6
carbon source	L-Proline (C)	+0.7	+0.2	+0.3	-0.0	-1.2
carbon source	D-Gluconic Acid (C)	+0.5	-0.2	+0.2	-0.8	+0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.3	+0.4	+0.3	-1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	-0.6	-0.2	-0.1	+1.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.1	+0.6	-0.6	+0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.2	-0.7	+0.0	+0.5	+1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.1	+0.1	-0.4	+1.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.1	-0.2	+0.5	+1.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.2	+0.2	-0.3	+0.6	+1.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.1	+0.4	-0.1	+1.0	+0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	-0.3	+0.0	+0.8	+1.0
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	+0.0	+0.4	+0.0	+2.8