Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000123 and ABIE53_000124 are separated by 42 nucleotidesABIE53_000124 and ABIE53_000125 are separated by 63 nucleotidesABIE53_000125 and ABIE53_000126 are separated by 84 nucleotidesABIE53_000126 and ABIE53_000127 are separated by 84 nucleotides ABIE53_000123: ABIE53_000123 - methyl-accepting chemotaxis protein-1 (serine sensor receptor), at 128,628 to 130,550 _000123 ABIE53_000124: ABIE53_000124 - purine-binding chemotaxis protein CheW, at 130,593 to 131,123 _000124 ABIE53_000125: ABIE53_000125 - two-component system chemotaxis sensor kinase CheA, at 131,187 to 133,487 _000125 ABIE53_000126: ABIE53_000126 - two-component system chemotaxis response regulator CheY, at 133,572 to 133,949 _000126 ABIE53_000127: ABIE53_000127 - chemotaxis protein MotB, at 134,034 to 135,041 _000127
Group Condition ABIE53_000123 ABIE53_000124 ABIE53_000125 ABIE53_000126 ABIE53_000127
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -2.8 -5.3 -4.6 -2.4 -4.2
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -2.1 -4.1 -4.6 -2.7 -2.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 -4.3 -4.4 -2.4 -3.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -3.1 -2.4 -4.0 -4.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.3 -3.2 -3.0 -1.4 -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 -2.3 -3.7 -1.9 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -3.3 -1.5 -1.8 -3.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -1.4 -1.5 -1.8 -3.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -2.4 -2.3 -1.1 -2.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.7 -1.6 -1.4 -1.5 -1.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.7 -2.1 -1.1 -1.6 -1.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.9 -2.4 -1.0 -0.3 -1.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 -2.1 -1.8 -0.4 -2.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -1.7 -1.2 -0.9 -1.8
stress Growth in presence of limonene -0.8 +0.3 +0.2 +0.6 +5.3
carbon source Xylitol (C) +0.3 +0.9 +1.4 +1.1 +3.2
stress Growth in presence of pinene -0.3 +1.7 +1.3 +1.2 +3.2
stress Growth in presence of pinene -0.5 +1.3 +1.2 +1.0 +4.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +3.1 +2.1 +1.4 -0.4
stress Growth in presence of pinene -0.4 +1.2 +1.1 +1.3 +4.2
carbon source D-Gluconic Acid (C) +0.2 +1.2 +1.5 +1.9 +3.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +2.9 +2.1 +1.7 +0.5
biofilm biofilm; attached cells from 96 well plate assay in R2A +0.6 +3.7 +2.4 +2.6 +3.5
biofilm biofilm; attached cells from 96 well plate assay in R2A +0.9 +3.6 +2.5 +2.3 +3.5
r2a no shaking R2A no shaking -0.1 +2.8 +1.8 +3.1 +5.3
r2a no shaking R2A no shaking +0.0 +2.6 +1.6 +3.3 +5.4
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound +1.1 +4.3 +3.1 +3.2 +5.6
biofilm biofilm; planktonic cells from 96 well plate assay in R2A +0.9 +4.6 +3.3 +3.6 +5.4
biofilm biofilm; planktonic cells from 96 well plate assay in R2A +1.0 +4.6 +3.3 +3.5 +5.4
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound +1.2 +4.4 +3.0 +3.5 +5.7
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ABIE53_000123
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