Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000119 and ABIE53_000120 are separated by 5 nucleotidesABIE53_000120 and ABIE53_000121 overlap by 4 nucleotidesABIE53_000121 and ABIE53_000122 overlap by 4 nucleotidesABIE53_000122 and ABIE53_000123 are separated by 15 nucleotides ABIE53_000119: ABIE53_000119 - two-component system chemotaxis response regulator CheB, at 125,556 to 126,644 _000119 ABIE53_000120: ABIE53_000120 - chemotaxis protein CheD, at 126,650 to 127,471 _000120 ABIE53_000121: ABIE53_000121 - chemotaxis protein methyltransferase CheR, at 127,468 to 128,427 _000121 ABIE53_000122: ABIE53_000122 - hypothetical protein, at 128,424 to 128,612 _000122 ABIE53_000123: ABIE53_000123 - methyl-accepting chemotaxis protein-1 (serine sensor receptor), at 128,628 to 130,550 _000123
Group Condition ABIE53_000119 ABIE53_000120 ABIE53_000121 ABIE53_000122 ABIE53_000123
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -4.3 -5.7 -4.5 -3.5 -2.8
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -4.3 -5.7 -4.4 -0.5 -2.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 -2.4 -3.2 -1.8 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -4.7 -1.4 -3.7 -0.7 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.9 -1.8 -3.0 -1.8 -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.8 -0.8 -2.8 -2.1 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.0 -2.5 -1.8 -0.3 -1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.6 -1.9 -1.7 -1.8 -1.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.4 -2.0 -1.9 -0.5 -1.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.1 -1.7 -2.0 -0.5 -1.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.3 -1.5 -1.3 -1.1 -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.4 -1.2 -2.1 -0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 -1.0 -1.3 +0.1 -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.7 -1.7 -1.5 +0.8 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.7 -1.5 -0.4 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -0.7 -1.1 +0.8 -1.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 -0.3 -1.3 +0.7 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.9 -0.9 -1.1 +1.0 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.4 -0.5 -1.5 +1.9 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.2 +0.9 -2.9 +0.7
r2a no shaking R2A no shaking +2.8 +0.9 +1.0 -2.1 -0.1
r2a no shaking R2A no shaking +2.9 +0.7 +1.0 -1.5 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.9 -0.1 +2.9 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.9 +2.4 -1.3 +1.0
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound -0.1 +2.0 +1.5 +0.1 +1.1
biofilm biofilm; planktonic cells from 96 well plate assay in R2A +0.4 +2.0 +1.8 +0.1 +0.9
biofilm biofilm; attached cells from 96 well plate assay in R2A +0.1 +1.4 +1.3 +1.5 +0.9
carbon source m-Inositol (C) +1.5 +0.9 +1.0 +1.3 +0.7
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound +0.1 +1.8 +1.4 +1.5 +1.2
biofilm biofilm; planktonic cells from 96 well plate assay in R2A +0.3 +1.9 +1.9 +1.4 +1.0
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