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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia graminis OAS925
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500 nt
ABIE53_000085 and ABIE53_000086 are separated by 40 nucleotides
ABIE53_000086 and ABIE53_000087 are separated by 127 nucleotides
ABIE53_000087 and ABIE53_000088 are separated by 137 nucleotides
ABIE53_000088 and ABIE53_000089 are separated by 18 nucleotides
ABIE53_000085: ABIE53_000085 - flagellar biosynthetic protein FliQ, at 97,081 to 97,350
_000085
ABIE53_000086: ABIE53_000086 - flagellar biosynthetic protein FliR, at 97,391 to 98,173
_000086
ABIE53_000087: ABIE53_000087 - flagellin-like hook-associated protein FlgL, at 98,301 to 98,486
_000087
ABIE53_000088: ABIE53_000088 - hypothetical protein, at 98,624 to 98,827
_000088
ABIE53_000089: ABIE53_000089 - hypothetical protein, at 98,846 to 99,061
_000089
Group
Condition
ABIE53
_000085
ABIE53
_000086
ABIE53
_000087
ABIE53
_000088
ABIE53
_000089
motility_chemotaxis
Motility_chemotaxis, R2A; outer cut
-4.4
-4.7
-4.3
N.D.
N.D.
motility_chemotaxis
Motility_chemotaxis, R2A; outer cut
-4.4
-3.9
-3.8
N.D.
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
-2.1
-1.8
-4.4
N.D.
N.D.
carbon source
D-Xylose (C)
+3.0
+3.1
+1.8
N.D.
N.D.
r2a no shaking
R2A no shaking
+3.0
+2.9
+2.3
N.D.
N.D.
carbon source
m-Inositol (C)
+3.1
+3.2
+1.9
N.D.
N.D.
carbon source
D-Galacturonic Acid (C)
+3.4
+3.6
+1.6
N.D.
N.D.
carbon source
L-Fucose (C)
+3.4
+3.5
+1.8
N.D.
N.D.
carbon source
D-Glucuronic Acid (C)
+3.6
+3.7
+1.6
N.D.
N.D.
carbon source
L-Glutamine (C)
+3.4
+3.6
+2.0
N.D.
N.D.
carbon source
L-Proline (C)
+3.3
+3.4
+2.2
N.D.
N.D.
carbon source
D-Sorbitol (C)
+3.5
+3.6
+1.8
N.D.
N.D.
r2a no shaking
R2A no shaking
+3.2
+3.1
+2.8
N.D.
N.D.
carbon source
D-Galacturonic Acid (C)
+3.7
+3.9
+1.5
N.D.
N.D.
carbon source
D-Glucose (C)
+3.6
+3.7
+2.0
N.D.
N.D.
carbon source
D-Glucuronic Acid (C)
+3.9
+4.1
+1.5
N.D.
N.D.
carbon source
L-Proline (C)
+3.6
+3.7
+2.7
N.D.
N.D.
carbon source
L-Rhamnose (C)
+4.2
+4.4
+1.6
N.D.
N.D.
carbon source
D-Trehalose (C)
+3.8
+3.8
+2.8
N.D.
N.D.
carbon source
D-Glucose-6-Phosphate (C)
+4.3
+4.3
+2.2
N.D.
N.D.
carbon source
D-Galactose (C)
+4.1
+4.3
+2.5
N.D.
N.D.
carbon source
D-Mannose (C)
+4.4
+4.3
+2.5
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
+4.1
+4.3
+2.9
N.D.
N.D.
carbon source
Xylitol (C)
+4.2
+4.2
+2.9
N.D.
N.D.
carbon source
L-Histidine (C)
+4.5
+4.7
+2.2
N.D.
N.D.
carbon source
D-Fructose (C)
+4.6
+4.7
+2.2
N.D.
N.D.
carbon source
D-Galactose (C)
+4.3
+4.5
+2.9
N.D.
N.D.
carbon source
m-Inositol (C)
+4.4
+4.6
+2.9
N.D.
N.D.
carbon source
D-Glucose (C)
+4.6
+4.7
+2.6
N.D.
N.D.
carbon source
D-Sorbitol (C)
+4.7
+4.9
+2.7
N.D.
N.D.
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