Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000038 and ABIE53_000039 are separated by 13 nucleotidesABIE53_000039 and ABIE53_000040 are separated by 16 nucleotidesABIE53_000040 and ABIE53_000041 are separated by 60 nucleotidesABIE53_000041 and ABIE53_000042 overlap by 4 nucleotides ABIE53_000038: ABIE53_000038 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 47,120 to 47,938 _000038 ABIE53_000039: ABIE53_000039 - SAM-dependent MidA family methyltransferase, at 47,952 to 49,142 _000039 ABIE53_000040: ABIE53_000040 - hypothetical protein, at 49,159 to 49,353 _000040 ABIE53_000041: ABIE53_000041 - tRNA nucleotidyltransferase (CCA-adding enzyme), at 49,414 to 50,646 _000041 ABIE53_000042: ABIE53_000042 - glutathione S-transferase, at 50,643 to 51,296 _000042
Group Condition ABIE53_000038 ABIE53_000039 ABIE53_000040 ABIE53_000041 ABIE53_000042
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 N.D. -1.8 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. -1.9 N.D. -0.3
carbon source D-Arabinose (C) -0.3 N.D. -0.7 N.D. -0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 N.D. -1.4 N.D. -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 N.D. -1.0 N.D. -0.2
carbon source L-Rhamnose (C) +0.0 N.D. -1.4 N.D. -0.3
carbon source D-Lactate (C) -0.4 N.D. -0.7 N.D. -0.6
carbon source D-Alanine (C) +0.0 N.D. -1.4 N.D. -0.2
carbon source Azelaic 20 mM (C) +0.1 N.D. -1.4 N.D. -0.3
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound -0.3 N.D. -1.0 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 N.D. -0.8 N.D. -0.1
carbon source D-Mannose (C) +0.5 N.D. -1.3 N.D. -0.6
carbon source D-Glucose-6-Phosphate (C) +0.3 N.D. -1.2 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 N.D. +0.1 N.D. -0.2
motility_chemotaxis Motility_chemotaxis, R2A; inner cut +0.2 N.D. -1.0 N.D. -0.3
carbon source D-Galacturonic Acid (C) +0.2 N.D. -0.7 N.D. -0.5
carbon source L-Histidine (C) +0.3 N.D. -1.1 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.6 N.D. -0.7 N.D. +0.2
carbon source D-Galactose (C) +0.2 N.D. -0.7 N.D. -0.5
plant outgrowth control Plant outgrowth control +0.4 N.D. -1.0 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 N.D. -1.2 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 N.D. -0.8 N.D. +0.5
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.7 N.D. -0.4 N.D. -0.4
soil extract Adenine 5 mM in soil extract +1.2 N.D. -0.9 N.D. -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 N.D. +1.0 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 N.D. +1.1 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 N.D. +1.2 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 N.D. +1.5 N.D. -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 N.D. +1.3 N.D. -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 N.D. +1.5 N.D. -0.0
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ABIE53_000038
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