Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_000014 and ABIE53_000015 are separated by 131 nucleotidesABIE53_000015 and ABIE53_000016 are separated by 278 nucleotidesABIE53_000016 and ABIE53_000017 are separated by 422 nucleotidesABIE53_000017 and ABIE53_000018 are separated by 155 nucleotides ABIE53_000014: ABIE53_000014 - indolepyruvate ferredoxin oxidoreductase, at 18,091 to 21,702 _000014 ABIE53_000015: ABIE53_000015 - malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 21,834 to 24,116 _000015 ABIE53_000016: ABIE53_000016 - MFS family permease, at 24,395 to 25,627 _000016 ABIE53_000017: ABIE53_000017 - orotate phosphoribosyltransferase, at 26,050 to 26,736 _000017 ABIE53_000018: ABIE53_000018 - two-component system capsular synthesis response regulator RcsB, at 26,892 to 27,581 _000018
Group Condition ABIE53_000014 ABIE53_000015 ABIE53_000016 ABIE53_000017 ABIE53_000018
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.6 +0.2 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.7 +0.2 N.D. +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -0.1 +0.0 N.D. +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 +0.1 +0.0 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.2 +0.0 N.D. +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.3 -0.1 -0.0 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.4 -0.1 N.D. -0.5
carbon source Acetylated xylan 10 g/L (C) -0.1 -0.5 +0.3 N.D. -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.1 -0.2 N.D. -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.2 +0.2 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 -0.4 +0.5 N.D. -0.6
carbon source Tween 20 (C) +0.2 -0.9 -0.1 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.3 +0.2 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.1 +0.1 N.D. +0.1
carbon source Tween 20 (C) +0.0 -1.1 -0.2 N.D. +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.1 +0.3 N.D. -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.3 +0.3 N.D. -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -0.3 -0.1 N.D. +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 +0.1 +0.3 N.D. -0.2
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 -0.3 +0.3 N.D. +0.2
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.2 +1.6 -0.5 N.D. -0.5
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 +0.4 +0.2 +0.2 N.D. -0.3
carbon source D-Lactate (C) -0.1 -0.1 -0.2 N.D. +0.9
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.1 +2.0 -0.7 N.D. -0.6
stress RCH2_defined_glucose_5mM with Adenine 2 mM -0.1 +1.2 -0.5 N.D. +0.4
stress RCH2_defined_glucose_5mM with Adenine 2 mM -0.3 +1.3 -0.4 N.D. +0.3
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.2 +2.0 -0.4 N.D. -0.4
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.2 +2.0 -0.4 N.D. +0.0
soil extract Adenine 5 mM in soil extract -0.2 +2.2 -0.4 N.D. +0.1
soil extract Adenine 5 mM in soil extract -0.2 +2.3 -0.2 N.D. +0.2
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