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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS18910 and ABIE51_RS18915 overlap by 4 nucleotides
ABIE51_RS18915 and ABIE51_RS18920 are separated by 6 nucleotides
ABIE51_RS18920 and ABIE51_RS18925 are separated by 170 nucleotides
ABIE51_RS18925 and ABIE51_RS18930 are separated by 28 nucleotides
ABIE51_RS18910: ABIE51_RS18910 - hypothetical protein, at 4,111,797 to 4,112,141
_RS18910
ABIE51_RS18915: ABIE51_RS18915 - adenine nucleotide alpha hydrolase, at 4,112,138 to 4,112,806
_RS18915
ABIE51_RS18920: ABIE51_RS18920 - S-formylglutathione hydrolase, at 4,112,813 to 4,113,643
_RS18920
ABIE51_RS18925: ABIE51_RS18925 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 4,113,814 to 4,114,923
_RS18925
ABIE51_RS18930: ABIE51_RS18930 - formaldehyde-responsive transcriptional repressor FrmR, at 4,114,952 to 4,115,227
_RS18930
Group
Condition
ABIE51
_RS18910
ABIE51
_RS18915
ABIE51
_RS18920
ABIE51
_RS18925
ABIE51
_RS18930
carbon source
Ying_OrganicAcid7 rep B; time point 1
N.D.
-0.4
-0.4
-0.1
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 1
N.D.
-0.2
-0.2
-0.2
N.D.
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
N.D.
-0.3
-0.1
-0.1
N.D.
carbon source
Ying_all64 rep B; time point 1
N.D.
-0.4
-0.1
-0.1
N.D.
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
N.D.
-0.3
-0.1
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
N.D.
-0.3
-0.1
-0.2
N.D.
carbon source
Ying_Nucleobase14 rep A; time point 1
N.D.
-0.4
-0.1
-0.0
N.D.
carbon source
Ying_all64 rep C; time point 3
N.D.
-0.4
+0.1
-0.1
N.D.
carbon source
casaminos (C)
N.D.
-0.4
-0.1
+0.1
N.D.
carbon source
Ying_Others16 rep C; time point 1
N.D.
-0.3
-0.1
+0.0
N.D.
carbon source
Ying_sugar7 rep C; time point 3
N.D.
-0.2
+0.1
-0.3
N.D.
carbon source
acetate (C)
N.D.
-0.3
-0.1
+0.1
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 1
N.D.
-0.3
+0.1
-0.1
N.D.
stress
R2A with 1-octen-3-ol 0.904549 mM
N.D.
-0.1
+0.1
-0.3
N.D.
carbon source
Ying_sugar7 rep C; time point 2
N.D.
-0.3
+0.1
-0.1
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 2
N.D.
-0.4
+0.2
-0.1
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 2
N.D.
-0.4
+0.2
-0.0
N.D.
carbon source
D-Cellobiose (C)
N.D.
+0.1
-0.4
+0.2
N.D.
carbon source
Ying_OrganicAcid7 rep B; time point 2
N.D.
-0.3
+0.1
+0.1
N.D.
stress
R2A with 1-octen-3-ol 0.904549 mM
N.D.
-0.2
+0.3
-0.2
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 3
N.D.
-0.3
+0.4
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
N.D.
+0.3
-0.1
-0.2
N.D.
stress
R2A with 1-octen-3-ol 1.3568235 mM
N.D.
+0.1
+0.2
-0.2
N.D.
carbon source
L-Tryptophan (C)
N.D.
+0.2
-0.2
+0.1
N.D.
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
N.D.
+0.3
+0.1
-0.1
N.D.
stress
R2A with 1-octen-3-ol 1.3568235 mM
N.D.
+0.2
+0.3
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
N.D.
+0.3
+0.2
-0.1
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
N.D.
+0.1
+0.4
-0.0
N.D.
stress
R2A with 3-octanone 1.77016666666667 mM
N.D.
+0.2
+0.1
+0.2
N.D.
stress
R2A with 3-octanone 2.65516666666667 mM
N.D.
+0.3
+0.3
+0.1
N.D.
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