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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS18705 and ABIE51_RS18710 are separated by 469 nucleotides
ABIE51_RS18710 and ABIE51_RS18715 are separated by 64 nucleotides
ABIE51_RS18715 and ABIE51_RS18720 are separated by 58 nucleotides
ABIE51_RS18720 and ABIE51_RS18725 are separated by 286 nucleotides
ABIE51_RS18705: ABIE51_RS18705 - MFS transporter, at 4,066,717 to 4,067,931
_RS18705
ABIE51_RS18710: ABIE51_RS18710 - HAD-IA family hydrolase, at 4,068,401 to 4,069,024
_RS18710
ABIE51_RS18715: ABIE51_RS18715 - DUF2784 domain-containing protein, at 4,069,089 to 4,069,499
_RS18715
ABIE51_RS18720: ABIE51_RS18720 - glucose 1-dehydrogenase, at 4,069,558 to 4,070,304
_RS18720
ABIE51_RS18725: ABIE51_RS18725 - vanadium-dependent haloperoxidase, at 4,070,591 to 4,071,994
_RS18725
Group
Condition
ABIE51
_RS18705
ABIE51
_RS18710
ABIE51
_RS18715
ABIE51
_RS18720
ABIE51
_RS18725
carbon source
propionate (C)
+0.1
-0.1
-2.6
+0.2
-0.1
carbon source
Glucuronamide (C)
-0.5
-0.1
-1.5
-0.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.1
+0.1
-1.9
+0.0
-0.2
carbon source
acetate (C)
+0.1
-0.1
-1.9
-0.0
-0.1
carbon source
Fumarate (C)
-0.2
+0.2
-1.6
-0.1
-0.2
carbon source
L-tyrosine (C)
-0.1
-0.6
-0.8
-0.1
-0.0
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.0
-0.0
-1.3
-0.0
-0.2
carbon source
D-Galactose (C)
-0.3
-0.3
-0.9
+0.1
-0.1
carbon source
L-Tryptophan (C)
-0.1
-0.3
-0.9
-0.2
-0.1
carbon source
succinate (C)
+0.0
-0.4
-0.8
-0.1
-0.1
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.3
-0.1
-0.6
-0.4
-0.1
carbon source
Ying_Others16 rep A; time point 1
+0.1
-0.1
-1.3
+0.1
-0.1
carbon source
acetate (C)
-0.1
+0.2
-1.7
+0.2
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.3
+0.0
-0.8
+0.1
-0.1
carbon source
Ying_Others16 rep C; time point 1
-0.1
+0.0
-1.0
-0.0
+0.1
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.3
+0.1
-0.7
-0.0
-0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.1
+0.3
-0.7
-0.5
-0.0
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.1
+0.2
-0.8
-0.2
-0.0
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.3
-0.1
-0.7
+0.3
-0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.1
+0.3
-0.9
-0.1
+0.0
carbon source
L-Malic (C)
-0.3
+0.5
-1.1
+0.3
-0.2
carbon source
Ying_Others16 rep B; time point 1
-0.6
-0.2
+1.0
-0.0
-0.0
carbon source
Ying_all64 rep B; time point 3
-0.3
+0.1
+0.6
-0.3
+0.1
carbon source
Fumarate (C)
-0.2
-0.3
+1.2
-0.3
+0.2
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.0
+0.0
+1.0
-0.3
-0.0
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.3
-0.2
+0.8
-0.2
-0.0
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.0
-0.2
+0.9
+0.2
-0.0
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.1
+0.3
+1.1
-0.4
-0.0
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.1
+0.2
+1.0
-0.2
-0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-0.2
+0.5
+0.9
-0.1
-0.0
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