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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS15725 and ABIE51_RS15730 are separated by 15 nucleotides
ABIE51_RS15730 and ABIE51_RS15735 are separated by 44 nucleotides
ABIE51_RS15735 and ABIE51_RS15740 are separated by 1 nucleotides
ABIE51_RS15740 and ABIE51_RS15745 are separated by 24 nucleotides
ABIE51_RS15725: ABIE51_RS15725 - SUF system Fe-S cluster assembly regulator, at 3,412,787 to 3,413,233
_RS15725
ABIE51_RS15730: ABIE51_RS15730 - Fe-S cluster assembly protein SufB, at 3,413,249 to 3,414,712
_RS15730
ABIE51_RS15735: ABIE51_RS15735 - Fe-S cluster assembly ATPase SufC, at 3,414,757 to 3,415,521
_RS15735
ABIE51_RS15740: ABIE51_RS15740 - Fe-S cluster assembly protein SufD, at 3,415,523 to 3,416,821
_RS15740
ABIE51_RS15745: ABIE51_RS15745 - cysteine desulfurase, at 3,416,846 to 3,418,090
_RS15745
Group
Condition
ABIE51
_RS15725
ABIE51
_RS15730
ABIE51
_RS15735
ABIE51
_RS15740
ABIE51
_RS15745
carbon source
L-Tryptophan (C)
-2.8
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-2.3
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-1.9
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 3
-1.8
N.D.
N.D.
N.D.
N.D.
carbon source
D-Maltose (C)
-1.7
N.D.
N.D.
N.D.
N.D.
carbon source
acetate (C)
-1.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 2
-1.6
N.D.
N.D.
N.D.
N.D.
carbon source
D-Glucose-6-Phosphate (C)
-1.5
N.D.
N.D.
N.D.
N.D.
carbon source
acetate (C)
-1.4
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 3
-1.3
N.D.
N.D.
N.D.
N.D.
carbon source
D-Glucuronic Acid (C)
-1.2
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-1.2
N.D.
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
-1.1
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-1.1
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-1.1
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 2
-1.0
N.D.
N.D.
N.D.
N.D.
stress
R2A with 3-octanone 2.65516666666667 mM
-1.0
N.D.
N.D.
N.D.
N.D.
stress
R2A with 3-octanone 1.77016666666667 mM
-1.0
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.9
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.9
N.D.
N.D.
N.D.
N.D.
r2a no stress control
R2A no stress control
-0.9
N.D.
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.8
N.D.
N.D.
N.D.
N.D.
dmso control
DMSO control
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_Others16 rep A; time point 1
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 1
-0.8
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
L-Asparagine (C)
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
-0.7
N.D.
N.D.
N.D.
N.D.
stress
R2A with 2-pentyl-furan 32.0526 mM
+1.1
N.D.
N.D.
N.D.
N.D.
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