Fitness for 5 genes in Lysobacter sp. OAE881

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500 ntABIE51_RS15335 and ABIE51_RS15340 are separated by 10 nucleotidesABIE51_RS15340 and ABIE51_RS15345 are separated by 2 nucleotidesABIE51_RS15345 and ABIE51_RS15350 overlap by 4 nucleotidesABIE51_RS15350 and ABIE51_RS15355 are separated by 212 nucleotides ABIE51_RS15335: ABIE51_RS15335 - PilX N-terminal domain-containing pilus assembly protein, at 3,329,974 to 3,330,474 _RS15335 ABIE51_RS15340: ABIE51_RS15340 - PilW family protein, at 3,330,485 to 3,331,765 _RS15340 ABIE51_RS15345: ABIE51_RS15345 - type IV pilus modification protein PilV, at 3,331,768 to 3,332,289 _RS15345 ABIE51_RS15350: ABIE51_RS15350 - GspH/FimT family pseudopilin, at 3,332,286 to 3,332,813 _RS15350 ABIE51_RS15355: ABIE51_RS15355 - histidine kinase, at 3,333,026 to 3,334,048 _RS15355
Group Condition ABIE51_RS15335 ABIE51_RS15340 ABIE51_RS15345 ABIE51_RS15350 ABIE51_RS15355
carbon source Ying_AminoAcid20 rep B; time point 2 -0.4 -0.4 -0.7 -0.1 -0.4
carbon source Ying_AminoAcid20 rep B; time point 1 -0.5 -0.3 -0.6 -0.2 -0.2
carbon source Ying_AminoAcid20 rep C; time point 2 -0.3 -0.3 -0.9 -0.2 -0.1
carbon source Ying_all64 rep B; time point 2 -0.4 -0.2 -0.6 -0.2 -0.3
carbon source Ying_all64 rep A; time point 3 -0.8 -0.6 -0.4 -0.2 +0.4
carbon source Ying_all64 rep A; time point 2 -0.4 -0.2 -0.7 -0.1 -0.2
carbon source Ying_AminoAcid20 rep A; time point 3 -0.4 -0.5 -0.5 -0.1 +0.1
carbon source Ying_AminoAcid20 rep C; time point 1 -0.2 -0.4 -0.6 -0.1 -0.1
carbon source Ying_OrganicAcid7 rep B; time point 2 -0.3 -0.2 -0.5 +0.0 -0.2
carbon source Ying_AminoAcid20 rep A; time point 2 -0.4 -0.3 -0.5 +0.0 -0.1
carbon source Ying_OrganicAcid7 rep C; time point 2 -0.5 -0.2 -0.4 -0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media -0.4 -0.0 -0.2 -0.2 -0.4
carbon source succinate (C) -0.6 -0.0 +0.1 -0.1 -0.5
carbon source Ying_AminoAcid20 rep A; time point 1 -0.3 -0.3 -0.6 -0.2 +0.1
carbon source Ying_AminoAcid20 rep B; time point 3 -0.4 -0.6 -0.7 +0.2 +0.3
carbon source Glucuronamide (C) -0.4 -0.0 -0.4 -0.0 -0.3
carbon source Ying_OrganicAcid7 rep A; time point 2 -0.3 -0.1 -0.4 +0.1 -0.2
carbon source Ying_all64 rep C; time point 3 -0.3 -0.4 -0.3 +0.0 +0.1
carbon source Ying_AminoAcid20 rep C; time point 3 -0.5 -0.6 -0.5 +0.2 +0.5
carbon source Ying_Others16 rep B; time point 1 -0.3 -0.0 -0.3 -0.3 +0.2
carbon source L-tyrosine (C) -0.3 +0.1 +0.2 -0.4 -0.4
carbon source Ying_all64 rep B; time point 3 -0.3 -0.4 -0.2 +0.1 +0.3
stress R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM -0.5 -0.2 -0.2 +0.2 +0.2
carbon source acetate (C) -0.3 +0.3 +0.3 -0.2 -0.3
stress R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM -0.4 -0.1 -0.2 +0.2 +0.2
dmso control DMSO control -0.3 -0.1 -0.1 +0.4 +0.2
carbon source pyruvate (C) +0.3 +0.2 +0.2 -0.3 -0.1
stress R2A with 2-pentyl-furan 32.0526 mM +0.3 +0.3 -0.2 +0.4 -0.0
stress R2A with 3-octanone 5.31033333333333 mM +0.4 +0.1 -0.1 +0.3 +0.2
carbon source D-Cellobiose (C) +0.3 +0.7 +0.6 -0.1 -0.2
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