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Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS15040 and ABIE51_RS15045 are separated by 301 nucleotides
ABIE51_RS15045 and ABIE51_RS15050 are separated by 96 nucleotides
ABIE51_RS15050 and ABIE51_RS15055 are separated by 527 nucleotides
ABIE51_RS15055 and ABIE51_RS15060 are separated by 131 nucleotides
ABIE51_RS15040: ABIE51_RS15040 - phytase, at 3,265,708 to 3,266,730
_RS15040
ABIE51_RS15045: ABIE51_RS15045 - TonB-dependent receptor, at 3,267,032 to 3,269,377
_RS15045
ABIE51_RS15050: ABIE51_RS15050 - uracil phosphoribosyltransferase, at 3,269,474 to 3,270,106
_RS15050
ABIE51_RS15055: ABIE51_RS15055 - aldehyde-activating protein, at 3,270,634 to 3,271,035
_RS15055
ABIE51_RS15060: ABIE51_RS15060 - serine hydrolase, at 3,271,167 to 3,272,783
_RS15060
Group
Condition
ABIE51
_RS15040
ABIE51
_RS15045
ABIE51
_RS15050
ABIE51
_RS15055
ABIE51
_RS15060
carbon source
acetate (C)
-0.1
+0.1
-0.5
-0.0
-0.3
carbon source
D-Glucose-6-Phosphate (C)
-0.2
+0.0
-0.3
+0.0
-0.2
carbon source
L-Asparagine (C)
-0.7
-0.3
+0.3
-0.0
-0.0
carbon source
succinate (C)
-0.5
+0.1
-0.0
-0.1
+0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.2
-0.1
-0.1
+0.2
-0.2
carbon source
Ying_all64 rep A; time point 1
-0.1
-0.0
-0.2
-0.3
+0.3
carbon source
2-Deoxy-D-Ribose (C)
+0.2
-0.2
-0.4
+0.0
+0.2
carbon source
L-Tryptophan (C)
-0.3
+0.3
-0.1
+0.0
-0.2
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
+0.0
+0.1
-0.5
-0.1
+0.3
carbon source
Fumarate (C)
-0.4
+0.1
+0.2
-0.2
+0.1
carbon source
D-Cellobiose (C)
+0.2
+0.2
-0.8
-0.0
+0.3
carbon source
Glucuronamide (C)
-0.3
+0.1
+0.3
+0.1
-0.3
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.0
+0.1
+0.2
-0.3
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.2
-0.0
-0.4
-0.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.2
+0.1
-0.1
-0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.0
+0.2
-0.0
-0.3
+0.2
carbon source
Fumarate (C)
-0.2
-0.1
+0.2
+0.1
+0.2
carbon source
Ying_AminoAcid20 rep C; time point 3
+0.2
-0.1
+0.4
-0.1
-0.1
dmso control
DMSO control
-0.0
+0.1
-0.2
-0.0
+0.4
carbon source
Ying_sugar7 rep B; time point 3
+0.2
-0.1
+0.4
-0.1
-0.0
stress
R2A with 3-octanone 2.65516666666667 mM
+0.1
-0.0
+0.1
+0.3
-0.2
carbon source
L-Glutamine (C)
-0.2
+0.1
+0.3
-0.2
+0.2
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.1
+0.1
+0.3
-0.3
+0.1
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.3
+0.2
-0.2
-0.0
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.3
+0.2
-0.4
+0.1
+0.3
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.3
+0.2
-0.1
-0.1
+0.2
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.0
+0.1
+0.5
-0.1
+0.3
carbon source
Ying_all64 rep C; time point 2
+0.3
+0.1
-0.0
+0.1
+0.4
r2a no stress control
R2A no stress control
+0.1
+0.2
+0.3
-0.0
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 2
+0.1
+0.1
+0.3
+0.1
+0.4
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