Fitness for 5 genes in Lysobacter sp. OAE881

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500 ntABIE51_RS14870 and ABIE51_RS14875 are separated by 11 nucleotidesABIE51_RS14875 and ABIE51_RS14880 are separated by 514 nucleotidesABIE51_RS14880 and ABIE51_RS14885 overlap by 32 nucleotidesABIE51_RS14885 and ABIE51_RS14890 are separated by 68 nucleotides ABIE51_RS14870: ABIE51_RS14870 - YciI family protein, at 3,228,725 to 3,229,150 _RS14870 ABIE51_RS14875: ABIE51_RS14875 - SRPBCC family protein, at 3,229,162 to 3,229,695 _RS14875 ABIE51_RS14880: ABIE51_RS14880 - RNA polymerase sigma factor, at 3,230,210 to 3,231,538 _RS14880 ABIE51_RS14885: ABIE51_RS14885 - DUF1428 domain-containing protein, at 3,231,507 to 3,231,875 _RS14885 ABIE51_RS14890: ABIE51_RS14890 - YceI family protein, at 3,231,944 to 3,232,534 _RS14890
Group Condition ABIE51_RS14870 ABIE51_RS14875 ABIE51_RS14880 ABIE51_RS14885 ABIE51_RS14890
carbon source Ying_Others16 rep B; time point 1 N.D. -0.2 +0.4 -5.0 -0.1
carbon source Fumarate (C) N.D. +0.2 +0.2 -4.2 +0.2
carbon source Fumarate (C) N.D. +0.1 -0.7 -2.9 +0.5
carbon source L-Asparagine (C) N.D. +0.2 -0.1 -2.5 +0.3
stress R2A with 3-octanone 2.65516666666667 mM N.D. -0.0 -0.5 -1.0 -0.4
carbon source Ying_all64 rep A; time point 1 N.D. -0.1 -0.2 -1.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media N.D. -0.0 +0.1 -1.2 -0.3
carbon source succinate (C) N.D. +0.2 +0.2 -1.4 -0.4
stress R2A with 2-pentyl-furan 32.0526 mM N.D. +0.1 -0.1 -1.2 -0.2
carbon source Glucuronamide (C) N.D. +0.5 -0.1 -0.9 -0.7
carbon source D-Glucose-6-Phosphate (C) N.D. +0.2 +0.2 -1.7 +0.4
carbon source D-Maltose (C) N.D. +0.2 +0.0 -1.0 -0.1
carbon source D-Galactose (C) N.D. +0.3 -0.4 -0.1 -0.6
agar plate interaction control Parafilmed volatile R2A_HEPES agar plate with no fungus N.D. -0.0 +0.3 -1.1 +0.1
carbon source L-tyrosine (C) N.D. -0.1 -0.2 -0.9 +0.6
carbon source D-Glucuronic Acid (C) N.D. +0.3 +0.3 -1.1 +0.3
carbon source Ying_Others16 rep A; time point 1 N.D. -0.1 -0.6 +0.7 +0.0
stress R2A with 2-pentyl-furan 32.0526 mM N.D. -0.2 -0.2 +0.8 -0.3
carbon source Ying_all64 rep B; time point 3 N.D. -0.3 -0.4 +1.1 -0.0
stress R2A with 2-pentyl-furan 21.3684 mM N.D. -0.2 -0.1 +0.9 -0.2
stress R2A with 2-pentyl-furan 21.3684 mM N.D. +0.1 -0.1 +0.9 -0.5
carbon source Ying_sugar7 rep B; time point 3 N.D. -0.2 -0.3 +1.3 -0.2
carbon source Ying_all64 rep C; time point 3 N.D. -0.1 -0.2 +0.9 -0.1
carbon source Ying_AminoAcid20 rep B; time point 3 N.D. +0.0 -0.3 +0.9 -0.1
carbon source Ying_all64 rep A; time point 3 N.D. -0.1 -0.1 +1.1 -0.2
r2a no stress control R2A no stress control N.D. +0.0 +0.2 +1.0 -0.4
carbon source Ying_sugar7 rep A; time point 3 N.D. -0.1 -0.2 +1.3 +0.1
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.2 -0.1 +0.5 +0.7
stress R2A with 3-octanone 2.65516666666667 mM N.D. +0.1 -0.0 +1.1 +0.3
carbon source propionate (C) N.D. +0.3 +0.3 +0.5 +0.6
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