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Cofit
Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS14850 and ABIE51_RS14855 are separated by 113 nucleotides
ABIE51_RS14855 and ABIE51_RS14860 are separated by 29 nucleotides
ABIE51_RS14860 and ABIE51_RS14865 are separated by 51 nucleotides
ABIE51_RS14865 and ABIE51_RS14870 are separated by 32 nucleotides
ABIE51_RS14850: ABIE51_RS14850 - LysR substrate-binding domain-containing protein, at 3,226,367 to 3,227,254
_RS14850
ABIE51_RS14855: ABIE51_RS14855 - YciI family protein, at 3,227,368 to 3,227,796
_RS14855
ABIE51_RS14860: ABIE51_RS14860 - VOC family protein, at 3,227,826 to 3,228,236
_RS14860
ABIE51_RS14865: ABIE51_RS14865 - VOC family protein, at 3,228,288 to 3,228,692
_RS14865
ABIE51_RS14870: ABIE51_RS14870 - YciI family protein, at 3,228,725 to 3,229,150
_RS14870
Group
Condition
ABIE51
_RS14850
ABIE51
_RS14855
ABIE51
_RS14860
ABIE51
_RS14865
ABIE51
_RS14870
stress
R2A with 3-octanone 5.31033333333333 mM
-0.3
-1.6
-0.5
N.D.
N.D.
carbon source
Glucuronamide (C)
+0.0
-0.9
-1.3
N.D.
N.D.
stress
R2A with 3-octanone 5.31033333333333 mM
-0.2
-1.0
-0.9
N.D.
N.D.
stress
R2A with 3-octanone 5.31033333333333 mM
-0.1
-1.2
-0.7
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.1
-1.1
-0.8
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 2
-0.1
-0.9
-0.8
N.D.
N.D.
stress
R2A with 3-octanone 2.65516666666667 mM
-0.3
-0.9
-0.6
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 1
-0.4
-0.9
-0.4
N.D.
N.D.
stress
R2A with 3-octanone 5.31033333333333 mM
-0.4
-1.0
-0.3
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 3
-0.2
-1.1
-0.2
N.D.
N.D.
carbon source
Ying_Others16 rep B; time point 1
-0.2
-0.7
-0.6
N.D.
N.D.
carbon source
Ying_sugar7 rep A; time point 2
+0.1
-0.7
-0.7
N.D.
N.D.
stress
R2A with 3-octanone 1.77016666666667 mM
+0.1
-1.0
-0.4
N.D.
N.D.
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.0
-0.5
-0.7
N.D.
N.D.
stress
R2A with 3-octanone 2.65516666666667 mM
-0.2
-0.9
-0.1
N.D.
N.D.
carbon source
Fumarate (C)
-0.3
-0.3
-0.7
N.D.
N.D.
carbon source
Fumarate (C)
+0.0
-0.1
-1.1
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.0
-1.0
-0.1
N.D.
N.D.
carbon source
Ying_all64 rep A; time point 2
-0.2
-0.6
-0.4
N.D.
N.D.
stress
R2A with 3-octanone 2.65516666666667 mM
-0.1
-0.6
-0.4
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+0.1
+0.4
-1.6
N.D.
N.D.
carbon source
L-Glutamine (C)
-0.1
+0.5
-1.4
N.D.
N.D.
dmso control
DMSO control
+0.1
-0.2
-0.9
N.D.
N.D.
carbon source
Ying_sugar7 rep A; time point 3
+0.1
-0.6
-0.4
N.D.
N.D.
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.2
-0.2
-0.7
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.2
+0.2
-0.7
N.D.
N.D.
dmso control
DMSO control
+0.2
+0.3
-0.5
N.D.
N.D.
carbon source
Ying_Others16 rep A; time point 1
-0.3
+0.7
+0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.1
+0.4
+0.8
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.1
+0.5
+0.6
N.D.
N.D.
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