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Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS14675 and ABIE51_RS14680 are separated by 2 nucleotides
ABIE51_RS14680 and ABIE51_RS14685 overlap by 4 nucleotides
ABIE51_RS14685 and ABIE51_RS14690 are separated by 260 nucleotides
ABIE51_RS14690 and ABIE51_RS14695 are separated by 112 nucleotides
ABIE51_RS14675: ABIE51_RS14675 - response regulator, at 3,187,714 to 3,189,246
_RS14675
ABIE51_RS14680: ABIE51_RS14680 - response regulator, at 3,189,249 to 3,189,704
_RS14680
ABIE51_RS14685: ABIE51_RS14685 - ATP-binding protein, at 3,189,701 to 3,191,512
_RS14685
ABIE51_RS14690: ABIE51_RS14690 - hypothetical protein, at 3,191,773 to 3,191,964
_RS14690
ABIE51_RS14695: ABIE51_RS14695 - PAS domain-containing sensor histidine kinase, at 3,192,077 to 3,193,264
_RS14695
Group
Condition
ABIE51
_RS14675
ABIE51
_RS14680
ABIE51
_RS14685
ABIE51
_RS14690
ABIE51
_RS14695
carbon source
Fumarate (C)
-0.6
-0.4
+0.1
-1.1
+0.1
carbon source
Ying_all64 rep A; time point 3
+0.2
-0.2
-0.2
-1.3
-0.3
carbon source
Ying_Others16 rep B; time point 1
-0.6
-0.3
-0.0
-0.7
-0.1
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.2
-0.3
+0.0
-0.4
-0.3
carbon source
L-Glutamine (C)
-0.4
-0.4
-0.2
+0.2
-0.2
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.4
-0.1
+0.2
-1.3
+0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.4
+0.1
-0.1
-1.1
-0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.2
+0.0
+0.1
-1.0
-0.0
carbon source
L-tyrosine (C)
+0.3
-0.2
-0.2
-0.3
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.5
-0.2
+0.1
+0.4
-0.4
carbon source
acetate (C)
-0.2
-0.4
-0.2
+0.5
-0.3
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.3
-0.0
+0.1
-0.9
-0.0
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.6
-0.1
+0.0
-1.1
+0.1
carbon source
L-Asparagine (C)
-0.4
-0.2
-0.0
+0.8
-0.4
r2a no stress control
R2A no stress control
+0.4
-0.0
-0.1
-0.6
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.7
+0.3
-0.1
+0.5
-0.1
carbon source
D-Maltose (C)
+0.1
-0.1
+0.0
+0.5
-0.5
carbon source
L-Malic (C)
-0.2
+0.0
+0.3
+0.4
-0.5
carbon source
D-Cellobiose (C)
-0.3
-0.0
+0.2
+0.5
-0.2
carbon source
D-Glucuronic Acid (C)
-0.5
+0.3
-0.2
+0.5
+0.0
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.2
+0.2
-0.1
-0.4
+0.3
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.2
+0.2
+0.4
-0.5
+0.1
carbon source
pyruvate (C)
+0.3
-0.1
-0.3
+0.9
-0.5
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.9
-0.1
-0.1
-0.2
-0.1
carbon source
Fumarate (C)
-0.5
+0.1
-0.1
+0.8
+0.2
carbon source
L-Tryptophan (C)
-0.1
+0.1
-0.2
+1.0
-0.4
carbon source
2-Deoxy-D-Ribose (C)
+0.1
-0.1
-0.1
+0.7
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.0
-0.2
+0.0
+1.0
+0.2
carbon source
succinate (C)
+0.6
+0.2
-0.2
+1.0
+0.2
carbon source
Glucuronamide (C)
+0.9
+0.3
+0.1
+1.2
-0.2
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