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Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS14665 and ABIE51_RS14670 are separated by 80 nucleotides
ABIE51_RS14670 and ABIE51_RS14675 are separated by 1139 nucleotides
ABIE51_RS14675 and ABIE51_RS14680 are separated by 2 nucleotides
ABIE51_RS14680 and ABIE51_RS14685 overlap by 4 nucleotides
ABIE51_RS14665: ABIE51_RS14665 - glycosyltransferase family 4 protein, at 3,183,318 to 3,184,376
_RS14665
ABIE51_RS14670: ABIE51_RS14670 - amylo-alpha-1,6-glucosidase, at 3,184,457 to 3,186,574
_RS14670
ABIE51_RS14675: ABIE51_RS14675 - response regulator, at 3,187,714 to 3,189,246
_RS14675
ABIE51_RS14680: ABIE51_RS14680 - response regulator, at 3,189,249 to 3,189,704
_RS14680
ABIE51_RS14685: ABIE51_RS14685 - ATP-binding protein, at 3,189,701 to 3,191,512
_RS14685
Group
Condition
ABIE51
_RS14665
ABIE51
_RS14670
ABIE51
_RS14675
ABIE51
_RS14680
ABIE51
_RS14685
carbon source
L-Asparagine (C)
-0.0
-0.3
-0.4
-0.2
-0.0
carbon source
Ying_OrganicAcid7 rep C; time point 1
+0.0
-0.1
-0.6
-0.1
-0.1
carbon source
acetate (C)
+0.1
-0.3
-0.2
-0.4
-0.2
carbon source
L-Glutamine (C)
-0.0
+0.2
-0.4
-0.4
-0.2
carbon source
Fumarate (C)
+0.3
-0.2
-0.6
-0.4
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.2
-0.0
-0.5
-0.2
+0.1
carbon source
Ying_sugar7 rep C; time point 2
+0.1
-0.3
-0.3
-0.2
-0.0
carbon source
Ying_sugar7 rep C; time point 3
+0.3
-0.4
+0.0
-0.3
-0.2
carbon source
Ying_sugar7 rep A; time point 3
+0.1
-0.3
+0.0
-0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.1
-0.2
-0.4
+0.2
-0.2
carbon source
Ying_Others16 rep B; time point 1
+0.1
+0.3
-0.6
-0.3
-0.0
carbon source
Ying_OrganicAcid7 rep B; time point 2
-0.2
-0.1
+0.2
-0.1
-0.3
carbon source
Ying_AminoAcid20 rep A; time point 2
-0.3
-0.2
+0.2
+0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.0
+0.1
-0.7
+0.3
-0.1
carbon source
D-Glucuronic Acid (C)
+0.2
-0.2
-0.5
+0.3
-0.2
carbon source
Ying_all64 rep B; time point 3
-0.2
-0.1
+0.4
+0.1
-0.4
carbon source
Ying_AminoAcid20 rep A; time point 3
-0.3
+0.1
+0.2
-0.1
-0.2
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.3
+0.1
+0.2
-0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.2
+0.1
-0.5
+0.1
-0.1
carbon source
Ying_sugar7 rep B; time point 3
+0.1
-0.4
+0.3
-0.0
-0.1
carbon source
D-Cellobiose (C)
-0.2
+0.2
-0.3
-0.0
+0.2
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.3
+0.1
+0.2
-0.2
+0.1
carbon source
pyruvate (C)
+0.1
+0.1
+0.3
-0.1
-0.3
carbon source
L-Tryptophan (C)
+0.3
+0.2
-0.1
+0.1
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.1
+0.0
+0.6
-0.1
-0.1
carbon source
succinate (C)
-0.0
-0.2
+0.6
+0.2
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-0.2
+0.1
+0.9
-0.1
-0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.1
+0.1
+0.5
+0.1
+0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.1
-0.1
+0.2
+0.2
+0.4
carbon source
Glucuronamide (C)
+0.1
-0.0
+0.9
+0.3
+0.1
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