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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS14010 and ABIE51_RS14015 are separated by 61 nucleotides
ABIE51_RS14015 and ABIE51_RS14020 are separated by 68 nucleotides
ABIE51_RS14020 and ABIE51_RS14025 are separated by 145 nucleotides
ABIE51_RS14025 and ABIE51_RS14035 are separated by 470 nucleotides
ABIE51_RS14010: ABIE51_RS14010 - recombination mediator RecR, at 3,036,384 to 3,036,983
_RS14010
ABIE51_RS14015: ABIE51_RS14015 - YbaB/EbfC family nucleoid-associated protein, at 3,037,045 to 3,037,365
_RS14015
ABIE51_RS14020: ABIE51_RS14020 - DNA polymerase III subunit gamma/tau, at 3,037,434 to 3,039,332
_RS14020
ABIE51_RS14025: ABIE51_RS14025 - tRNA-Ser, at 3,039,478 to 3,039,570
_RS14025
ABIE51_RS14035: ABIE51_RS14035 - YncE family protein, at 3,040,041 to 3,041,048
_RS14035
Group
Condition
ABIE51
_RS14010
ABIE51
_RS14015
ABIE51
_RS14020
ABIE51
_RS14025
ABIE51
_RS14035
stress
R2A with 3-octanone 5.31033333333333 mM
-0.5
N.D.
N.D.
N.D.
-0.3
carbon source
Ying_Others16 rep A; time point 1
-0.5
N.D.
N.D.
N.D.
-0.1
carbon source
Glucuronamide (C)
-0.5
N.D.
N.D.
N.D.
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.2
N.D.
N.D.
N.D.
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.0
N.D.
N.D.
N.D.
-0.4
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.3
N.D.
N.D.
N.D.
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 2
-0.2
N.D.
N.D.
N.D.
-0.1
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.2
N.D.
N.D.
N.D.
-0.2
carbon source
Ying_OrganicAcid7 rep B; time point 1
-0.2
N.D.
N.D.
N.D.
-0.1
carbon source
D-Galactose (C)
-0.5
N.D.
N.D.
N.D.
+0.3
carbon source
Ying_Nucleobase14 rep C; time point 1
-0.3
N.D.
N.D.
N.D.
+0.1
carbon source
Ying_all64 rep A; time point 1
-0.3
N.D.
N.D.
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.3
N.D.
N.D.
N.D.
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.2
N.D.
N.D.
N.D.
+0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.3
N.D.
N.D.
N.D.
+0.1
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.2
N.D.
N.D.
N.D.
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.2
N.D.
N.D.
N.D.
+0.2
carbon source
L-tyrosine (C)
-0.2
N.D.
N.D.
N.D.
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.3
N.D.
N.D.
N.D.
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.1
N.D.
N.D.
N.D.
+0.3
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.2
N.D.
N.D.
N.D.
+0.1
carbon source
pyruvate (C)
+0.1
N.D.
N.D.
N.D.
+0.3
carbon source
L-Glutamine (C)
+0.1
N.D.
N.D.
N.D.
+0.2
carbon source
pyruvate (C)
+0.1
N.D.
N.D.
N.D.
+0.3
carbon source
casaminos (C)
+0.2
N.D.
N.D.
N.D.
+0.1
carbon source
Fumarate (C)
+0.2
N.D.
N.D.
N.D.
+0.2
carbon source
L-Malic (C)
+0.2
N.D.
N.D.
N.D.
+0.3
carbon source
D-Maltose (C)
+0.3
N.D.
N.D.
N.D.
+0.3
carbon source
D-Maltose (C)
+0.1
N.D.
N.D.
N.D.
+0.4
carbon source
L-Asparagine (C)
+0.2
N.D.
N.D.
N.D.
+0.4
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