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Cofit
Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS13880 and ABIE51_RS13885 are separated by 107 nucleotides
ABIE51_RS13885 and ABIE51_RS13890 overlap by 4 nucleotides
ABIE51_RS13890 and ABIE51_RS13895 are separated by 255 nucleotides
ABIE51_RS13895 and ABIE51_RS13900 are separated by 1 nucleotides
ABIE51_RS13880: ABIE51_RS13880 - DegQ family serine endoprotease, at 3,010,968 to 3,012,491
_RS13880
ABIE51_RS13885: ABIE51_RS13885 - sigma-E factor negative regulatory protein, at 3,012,599 to 3,013,525
_RS13885
ABIE51_RS13890: ABIE51_RS13890 - RNA polymerase sigma factor RpoE, at 3,013,522 to 3,014,142
_RS13890
ABIE51_RS13895: ABIE51_RS13895 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 3,014,398 to 3,016,482
_RS13895
ABIE51_RS13900: ABIE51_RS13900 - hypothetical protein, at 3,016,484 to 3,016,984
_RS13900
Group
Condition
ABIE51
_RS13880
ABIE51
_RS13885
ABIE51
_RS13890
ABIE51
_RS13895
ABIE51
_RS13900
carbon source
Ying_sugar7 rep C; time point 3
-0.8
-4.1
-7.2
+0.2
+0.0
carbon source
Ying_sugar7 rep B; time point 3
-0.9
-4.2
-6.8
+0.3
+0.1
carbon source
Ying_sugar7 rep A; time point 3
-0.7
-3.4
-7.2
+0.2
+0.1
carbon source
Ying_sugar7 rep A; time point 2
-0.3
-3.4
-6.1
+0.3
+0.0
carbon source
Ying_sugar7 rep C; time point 2
-0.3
-2.9
-5.9
+0.4
+0.1
carbon source
Ying_sugar7 rep B; time point 2
-0.3
-2.6
-5.3
+0.4
+0.1
carbon source
Ying_all64 rep B; time point 3
+0.6
-1.7
-6.4
+0.1
-0.0
carbon source
Ying_all64 rep B; time point 2
+0.6
-1.4
-6.8
+0.2
+0.1
carbon source
Ying_all64 rep A; time point 2
+0.6
-0.3
-7.9
+0.2
+0.1
carbon source
Ying_AminoAcid20 rep A; time point 2
+1.3
+0.4
-8.2
+0.2
+0.0
carbon source
Ying_AminoAcid20 rep C; time point 2
+1.3
+0.4
-8.4
+0.3
+0.1
carbon source
Ying_all64 rep C; time point 3
+0.6
-0.3
-6.7
+0.1
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 2
+1.3
+0.1
-8.1
+0.3
+0.2
carbon source
Ying_all64 rep A; time point 3
+0.6
-0.3
-6.6
+0.1
+0.1
carbon source
Ying_all64 rep C; time point 2
+0.5
-0.4
-6.5
+0.3
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
+1.5
+0.3
-7.5
+0.1
+0.1
carbon source
Ying_AminoAcid20 rep A; time point 1
+1.2
+0.1
-7.2
+0.3
+0.1
carbon source
Ying_AminoAcid20 rep C; time point 3
+1.4
+0.2
-7.3
+0.1
+0.1
carbon source
Ying_AminoAcid20 rep A; time point 3
+1.5
+0.4
-7.4
+0.1
+0.0
carbon source
Ying_AminoAcid20 rep C; time point 1
+1.1
-0.2
-6.2
+0.3
-0.0
carbon source
Ying_AminoAcid20 rep B; time point 1
+1.1
+0.1
-6.2
+0.4
+0.0
carbon source
Ying_all64 rep C; time point 1
+0.5
-1.2
-3.9
+0.2
+0.0
carbon source
Ying_sugar7 rep A; time point 1
+0.2
-1.5
-3.0
+0.3
+0.1
carbon source
Ying_all64 rep A; time point 1
+0.4
-0.9
-3.7
+0.1
+0.0
carbon source
Ying_sugar7 rep C; time point 1
+0.1
-1.6
-2.8
+0.3
+0.0
carbon source
D-Glucose-6-Phosphate (C)
-0.5
-2.5
-0.9
+0.1
+0.0
carbon source
Ying_all64 rep B; time point 1
+0.5
-0.3
-3.9
+0.3
+0.0
carbon source
Ying_OrganicAcid7 rep B; time point 2
+1.2
-1.2
-3.8
+0.4
+0.1
carbon source
Ying_OrganicAcid7 rep A; time point 2
+1.2
-0.7
-3.3
+0.4
+0.1
carbon source
Ying_OrganicAcid7 rep C; time point 2
+1.1
-0.6
-3.1
+0.4
+0.1
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ABIE51_RS13880
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ABIE51_RS13885
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ABIE51_RS13890
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