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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS13010 and ABIE51_RS13015 are separated by 214 nucleotides
ABIE51_RS13015 and ABIE51_RS13020 are separated by 155 nucleotides
ABIE51_RS13020 and ABIE51_RS13025 are separated by 16 nucleotides
ABIE51_RS13025 and ABIE51_RS13030 are separated by 344 nucleotides
ABIE51_RS13010: ABIE51_RS13010 - hypothetical protein, at 2,804,429 to 2,805,004
_RS13010
ABIE51_RS13015: ABIE51_RS13015 - DUF4034 domain-containing protein, at 2,805,219 to 2,806,721
_RS13015
ABIE51_RS13020: ABIE51_RS13020 - rRNA pseudouridine synthase, at 2,806,877 to 2,807,599
_RS13020
ABIE51_RS13025: ABIE51_RS13025 - DUF1456 family protein, at 2,807,616 to 2,808,086
_RS13025
ABIE51_RS13030: ABIE51_RS13030 - SDR family oxidoreductase, at 2,808,431 to 2,809,579
_RS13030
Group
Condition
ABIE51
_RS13010
ABIE51
_RS13015
ABIE51
_RS13020
ABIE51
_RS13025
ABIE51
_RS13030
carbon source
L-tyrosine (C)
-0.1
+0.0
-0.3
-0.6
-0.2
stress
R2A with 1-octen-3-ol 1.3568235 mM
-0.1
-0.0
-0.3
-0.4
-0.1
carbon source
succinate (C)
-0.3
-0.1
-0.3
-0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.3
-0.0
-0.1
-0.2
-0.2
carbon source
D-Maltose (C)
-0.2
-0.2
-0.2
-0.4
+0.1
carbon source
Ying_Others16 rep B; time point 1
+0.2
-0.0
-0.0
-0.5
-0.2
carbon source
2-Deoxy-D-Ribose (C)
-0.2
-0.1
-0.3
+0.1
-0.1
carbon source
Glucuronamide (C)
-0.3
-0.0
-0.1
-0.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.2
-0.1
-0.2
-0.1
+0.1
carbon source
D-Maltose (C)
-0.3
-0.1
-0.2
+0.2
-0.1
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.1
-0.1
-0.2
-0.3
+0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.1
+0.1
-0.1
-0.4
-0.1
carbon source
Ying_all64 rep C; time point 2
+0.2
+0.0
-0.4
-0.1
-0.1
carbon source
Ying_OrganicAcid7 rep B; time point 1
+0.3
-0.0
-0.2
-0.2
-0.0
stress
R2A with 3-octanone 1.77016666666667 mM
-0.2
+0.0
+0.1
-0.2
+0.1
stress
R2A with 2-pentyl-furan 10.6842 mM
+0.2
-0.1
-0.2
-0.2
+0.1
carbon source
Ying_AminoAcid20 rep A; time point 2
+0.2
-0.1
-0.3
+0.2
-0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.2
-0.1
-0.1
-0.2
+0.0
r2a no stress control
R2A no stress control
+0.2
-0.0
-0.1
-0.3
+0.1
carbon source
Ying_all64 rep B; time point 3
-0.2
-0.1
+0.2
-0.0
+0.1
carbon source
Ying_OrganicAcid7 rep C; time point 2
+0.2
-0.1
-0.3
+0.2
+0.0
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.2
+0.0
+0.2
-0.2
+0.1
carbon source
L-Tryptophan (C)
-0.1
-0.0
-0.2
+0.2
+0.2
carbon source
Fumarate (C)
+0.1
-0.1
-0.4
+0.4
+0.0
carbon source
casaminos (C)
-0.2
-0.1
+0.1
+0.2
+0.1
carbon source
Fumarate (C)
-0.1
-0.0
-0.2
+0.3
+0.1
carbon source
D-Cellobiose (C)
+0.1
-0.3
-0.2
+0.6
+0.1
stress
R2A with 3-octanone 1.77016666666667 mM
-0.2
+0.0
+0.2
+0.3
+0.0
stress
R2A with 3-octanone 5.31033333333333 mM
-0.1
+0.1
+0.5
-0.0
+0.1
carbon source
L-Glutamine (C)
+0.2
-0.0
+0.2
+0.6
+0.0
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