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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS11890 and ABIE51_RS11895 are separated by 108 nucleotides
ABIE51_RS11895 and ABIE51_RS11900 overlap by 20 nucleotides
ABIE51_RS11900 and ABIE51_RS11905 are separated by 72 nucleotides
ABIE51_RS11905 and ABIE51_RS11910 are separated by 88 nucleotides
ABIE51_RS11890: ABIE51_RS11890 - hypothetical protein, at 2,569,999 to 2,570,475
_RS11890
ABIE51_RS11895: ABIE51_RS11895 - sulfatase-like hydrolase/transferase, at 2,570,584 to 2,571,255
_RS11895
ABIE51_RS11900: ABIE51_RS11900 - sulfatase-like hydrolase/transferase, at 2,571,236 to 2,572,918
_RS11900
ABIE51_RS11905: ABIE51_RS11905 - hypothetical protein, at 2,572,991 to 2,573,815
_RS11905
ABIE51_RS11910: ABIE51_RS11910 - alpha/beta hydrolase, at 2,573,904 to 2,574,845
_RS11910
Group
Condition
ABIE51
_RS11890
ABIE51
_RS11895
ABIE51
_RS11900
ABIE51
_RS11905
ABIE51
_RS11910
carbon source
pyruvate (C)
-0.5
+0.2
-0.1
N.D.
-0.4
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.6
-0.1
+0.0
N.D.
-0.1
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.5
-0.1
+0.1
N.D.
-0.2
carbon source
Ying_Others16 rep B; time point 1
-0.2
+0.1
+0.1
N.D.
-0.7
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.5
+0.1
+0.2
N.D.
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.7
-0.0
+0.0
N.D.
+0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.5
+0.1
+0.2
N.D.
-0.4
carbon source
Fumarate (C)
+0.3
-0.4
+0.1
N.D.
-0.6
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.5
-0.1
+0.2
N.D.
-0.0
r2a no stress control
R2A no stress control
-0.7
+0.1
+0.1
N.D.
+0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.3
+0.2
+0.1
N.D.
-0.3
dmso control
DMSO control
-0.4
-0.2
+0.2
N.D.
+0.2
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.5
+0.4
+0.0
N.D.
-0.1
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.4
+0.2
+0.1
N.D.
-0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.4
-0.0
+0.1
N.D.
+0.2
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.2
-0.2
+0.3
N.D.
+0.1
carbon source
casaminos (C)
-0.1
+0.4
+0.1
N.D.
-0.3
r2a no stress control
R2A no stress control
-0.3
-0.1
+0.2
N.D.
+0.2
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
+0.1
-0.4
-0.0
N.D.
+0.4
carbon source
succinate (C)
+0.6
+0.3
-0.3
N.D.
-0.5
carbon source
L-tyrosine (C)
+0.7
+0.3
-0.3
N.D.
-0.5
r2a no stress control
R2A no stress control
-0.2
+0.3
+0.2
N.D.
-0.2
carbon source
2-Deoxy-D-Ribose (C)
-0.4
+0.5
+0.0
N.D.
+0.0
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.0
-0.2
+0.2
N.D.
+0.3
carbon source
D-Cellobiose (C)
+0.6
-0.1
+0.2
N.D.
-0.5
carbon source
L-Malic (C)
+0.0
+0.5
+0.2
N.D.
-0.2
carbon source
acetate (C)
+0.6
+0.1
-0.1
N.D.
-0.0
carbon source
D-Maltose (C)
+0.1
+0.6
+0.2
N.D.
-0.1
carbon source
Glucuronamide (C)
+0.1
+0.4
-0.2
N.D.
+0.5
carbon source
propionate (C)
+0.8
+0.5
+0.2
N.D.
-0.1
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